miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 121770 0.72 0.425761
Target:  5'- aGCGCUGCGACCCCGcggUGGugcgcgagcuGGCCCc-- -3'
miRNA:   3'- -CGCGGCGUUGGGGU---ACUu---------CCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 120335 0.68 0.628264
Target:  5'- aCGCCGCGcgcGCCCgCGUGGccGGGCUCg-- -3'
miRNA:   3'- cGCGGCGU---UGGG-GUACU--UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 119595 0.66 0.757319
Target:  5'- cGCGCCGacggAGCCCCAUGGGcGUCUUc- -3'
miRNA:   3'- -CGCGGCg---UUGGGGUACUUcCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 119120 0.77 0.21544
Target:  5'- cGCGCgGcCGGCCUCGUGggGGCgCUGg -3'
miRNA:   3'- -CGCGgC-GUUGGGGUACuuCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 119054 0.67 0.678834
Target:  5'- gGCGCCGCGGCCgCCuccgcgGgcGcGCCCg-- -3'
miRNA:   3'- -CGCGGCGUUGG-GGua----CuuC-CGGGaca -5'
29385 3' -58.9 NC_006151.1 + 116998 0.67 0.728455
Target:  5'- gGUGCCGCAGCaccacgcgcuCCCccGcGGGCCCgGg -3'
miRNA:   3'- -CGCGGCGUUG----------GGGuaCuUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 115897 0.68 0.617114
Target:  5'- -aGCCGCu-CCCCGUugaccucGAAGGCgCUGa -3'
miRNA:   3'- cgCGGCGuuGGGGUA-------CUUCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 114675 0.67 0.708789
Target:  5'- aGCGCCGCGaagGCCUCGUGcucgaAGGGCgCg-- -3'
miRNA:   3'- -CGCGGCGU---UGGGGUAC-----UUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 114163 0.67 0.718658
Target:  5'- aGCGaCCGCGcgGCCCuCGUGcuGGCCUa-- -3'
miRNA:   3'- -CGC-GGCGU--UGGG-GUACuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 112708 0.67 0.728455
Target:  5'- cGCGgCGCuguGCgCCA---AGGCCCUGg -3'
miRNA:   3'- -CGCgGCGu--UGgGGUacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 112605 0.66 0.746836
Target:  5'- cCGCCGCGGCgCCGcuggcgcUGGAcGaGCCCUGc -3'
miRNA:   3'- cGCGGCGUUGgGGU-------ACUU-C-CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 111233 0.79 0.164038
Target:  5'- gGCGCCGCAGCCCCAgGAGGGUgUg-- -3'
miRNA:   3'- -CGCGGCGUUGGGGUaCUUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 110915 0.67 0.718658
Target:  5'- cGUGCCGCAGgUUCAcGAGGGCCaggGa -3'
miRNA:   3'- -CGCGGCGUUgGGGUaCUUCCGGga-Ca -5'
29385 3' -58.9 NC_006151.1 + 109809 0.66 0.73817
Target:  5'- uGCGCCGcCGGCCCCGcgcuccccgcUGgcGGaCCCc-- -3'
miRNA:   3'- -CGCGGC-GUUGGGGU----------ACuuCC-GGGaca -5'
29385 3' -58.9 NC_006151.1 + 109520 0.7 0.535043
Target:  5'- cCGCCGCAgccgucucagcagcGCCCCccGGAGGCgCCgUGg -3'
miRNA:   3'- cGCGGCGU--------------UGGGGuaCUUCCG-GG-ACa -5'
29385 3' -58.9 NC_006151.1 + 109247 0.68 0.648539
Target:  5'- cCGCCGCGGuCUCCGcUGgcGGCCCcGa -3'
miRNA:   3'- cGCGGCGUU-GGGGU-ACuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 109069 0.66 0.747794
Target:  5'- aGCaGCCGUccccGCCCCcgGAgucggccccggAGGCCCaGUg -3'
miRNA:   3'- -CG-CGGCGu---UGGGGuaCU-----------UCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 107949 0.74 0.307097
Target:  5'- cCGCCGCAGCCCCc-GucGGCCCa-- -3'
miRNA:   3'- cGCGGCGUUGGGGuaCuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 107861 0.69 0.608001
Target:  5'- gGCGCCcgagaCGGCCCCcccGGAGGCCCc-- -3'
miRNA:   3'- -CGCGGc----GUUGGGGua-CUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 107660 0.7 0.547853
Target:  5'- cGCaGCCGCAGCCgCAgcaGGGGCCCc-- -3'
miRNA:   3'- -CG-CGGCGUUGGgGUac-UUCCGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.