miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 141862 0.68 0.668762
Target:  5'- cGCGCCGCGcCCUCuggugccgGAGGGCCg--- -3'
miRNA:   3'- -CGCGGCGUuGGGGua------CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 141649 0.66 0.785205
Target:  5'- gGCGCgGCGggGCCCCGcgggcucguugUGGAGGCauguCUGc -3'
miRNA:   3'- -CGCGgCGU--UGGGGU-----------ACUUCCGg---GACa -5'
29385 3' -58.9 NC_006151.1 + 138343 0.66 0.770469
Target:  5'- aCGCgCGCAGCCCgCcgGcccgcaccuucguGGCCCUGa -3'
miRNA:   3'- cGCG-GCGUUGGG-GuaCuu-----------CCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 136862 0.67 0.688868
Target:  5'- cGCGCCGCGugACCgCCGUcGAGGaGCgCCUc- -3'
miRNA:   3'- -CGCGGCGU--UGG-GGUA-CUUC-CG-GGAca -5'
29385 3' -58.9 NC_006151.1 + 135906 0.69 0.587809
Target:  5'- cCGCCGCGACCCCGgc--GGUCgUGc -3'
miRNA:   3'- cGCGGCGUUGGGGUacuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 135381 0.7 0.50783
Target:  5'- uGCGCCGCGACCacggcguccaggCCGUcgucgccGGAGGCCUcGUg -3'
miRNA:   3'- -CGCGGCGUUGG------------GGUA-------CUUCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 133451 0.66 0.757319
Target:  5'- gGCGCuCuuGGCCCCGgucGAGGCCCg-- -3'
miRNA:   3'- -CGCG-GcgUUGGGGUac-UUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 132867 0.66 0.776033
Target:  5'- gGgGCCGCGccCCCCAgcAGGGCCUcGUc -3'
miRNA:   3'- -CgCGGCGUu-GGGGUacUUCCGGGaCA- -5'
29385 3' -58.9 NC_006151.1 + 132768 0.68 0.668762
Target:  5'- aGCGCCGgGcCCUCGUcGAAGGCCa--- -3'
miRNA:   3'- -CGCGGCgUuGGGGUA-CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 131558 0.69 0.608001
Target:  5'- gGCGCCGCAcggGCCCCGcgucgcucaUGguGGUCgCUGc -3'
miRNA:   3'- -CGCGGCGU---UGGGGU---------ACuuCCGG-GACa -5'
29385 3' -58.9 NC_006151.1 + 130561 0.67 0.698856
Target:  5'- cGCGCUGCcGCCCCAcGAGuGCaUCUGg -3'
miRNA:   3'- -CGCGGCGuUGGGGUaCUUcCG-GGACa -5'
29385 3' -58.9 NC_006151.1 + 130376 0.73 0.391526
Target:  5'- cGCGCCGCGGCgUCCAgcgcGAAGGCCa--- -3'
miRNA:   3'- -CGCGGCGUUG-GGGUa---CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 130346 0.68 0.638404
Target:  5'- cGCGCCGCGGCgUCGUGGuugacGGCCg--- -3'
miRNA:   3'- -CGCGGCGUUGgGGUACUu----CCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 129781 0.69 0.596883
Target:  5'- gGCGUCGCucccgccggcgugGGCCCgCAUG-AGGCCCgUGa -3'
miRNA:   3'- -CGCGGCG-------------UUGGG-GUACuUCCGGG-ACa -5'
29385 3' -58.9 NC_006151.1 + 129519 0.67 0.698856
Target:  5'- -aGCCGCuuGCCgCCGacggGggGGCCCgGg -3'
miRNA:   3'- cgCGGCGu-UGG-GGUa---CuuCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 128813 0.71 0.452574
Target:  5'- gGCGCgCGUGGCCCCGUacgcGGcgcucuGGGCCUUGUg -3'
miRNA:   3'- -CGCG-GCGUUGGGGUA----CU------UCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 127696 0.68 0.618128
Target:  5'- gGCGCUcuccuGCGACgagCUCGUGGAGGCCCcGg -3'
miRNA:   3'- -CGCGG-----CGUUG---GGGUACUUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 126211 1.09 0.001325
Target:  5'- uGCGCCGCAACCCCAUGAAGGCCCUGUa -3'
miRNA:   3'- -CGCGGCGUUGGGGUACUUCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 123891 0.69 0.587809
Target:  5'- uCGCCGCGGCCCCGccgugcggcgcGgcGGCCgUGa -3'
miRNA:   3'- cGCGGCGUUGGGGUa----------CuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 123315 0.71 0.489701
Target:  5'- cGCGCa-CAGCUUCAUGAAGGCCacgGUg -3'
miRNA:   3'- -CGCGgcGUUGGGGUACUUCCGGga-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.