miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 126211 1.09 0.001325
Target:  5'- uGCGCCGCAACCCCAUGAAGGCCCUGUa -3'
miRNA:   3'- -CGCGGCGUUGGGGUACUUCCGGGACA- -5'
29385 3' -58.9 NC_006151.1 + 86088 0.81 0.123931
Target:  5'- cGCGCCGCcGCCgCCAUG-GGGCCCgUGUa -3'
miRNA:   3'- -CGCGGCGuUGG-GGUACuUCCGGG-ACA- -5'
29385 3' -58.9 NC_006151.1 + 59519 0.8 0.133867
Target:  5'- cGCGCgCGCAGCgCCgCGUGAGGGCCCa-- -3'
miRNA:   3'- -CGCG-GCGUUG-GG-GUACUUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 111233 0.79 0.164038
Target:  5'- gGCGCCGCAGCCCCAgGAGGGUgUg-- -3'
miRNA:   3'- -CGCGGCGUUGGGGUaCUUCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 119120 0.77 0.21544
Target:  5'- cGCGCgGcCGGCCUCGUGggGGCgCUGg -3'
miRNA:   3'- -CGCGgC-GUUGGGGUACuuCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 15918 0.77 0.21544
Target:  5'- cCGCCGCcGCCCCGUGAggcGGGCCUc-- -3'
miRNA:   3'- cGCGGCGuUGGGGUACU---UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 86185 0.75 0.267246
Target:  5'- cCGCCGCGcuGCCCCcgGcGGGCCCg-- -3'
miRNA:   3'- cGCGGCGU--UGGGGuaCuUCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38865 0.75 0.280045
Target:  5'- aCGCCGCGGCCCUccGAGgcGGCCCUc- -3'
miRNA:   3'- cGCGGCGUUGGGGuaCUU--CCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 107949 0.74 0.307097
Target:  5'- cCGCCGCAGCCCCc-GucGGCCCa-- -3'
miRNA:   3'- cGCGGCGUUGGGGuaCuuCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 38698 0.74 0.314165
Target:  5'- aGCGCCGCu-CCCUcgGAcucGGGCCCg-- -3'
miRNA:   3'- -CGCGGCGuuGGGGuaCU---UCCGGGaca -5'
29385 3' -58.9 NC_006151.1 + 99698 0.74 0.328668
Target:  5'- gGCGCCGgggaGACgCCCAUGGAGGCgCCg-- -3'
miRNA:   3'- -CGCGGCg---UUG-GGGUACUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 37181 0.74 0.336102
Target:  5'- cCGCCGCGGCCCCGc---GGCCCUc- -3'
miRNA:   3'- cGCGGCGUUGGGGUacuuCCGGGAca -5'
29385 3' -58.9 NC_006151.1 + 60272 0.74 0.343659
Target:  5'- cCGCCGCAcgcGCCCCGUGGacugguagacggAGGCCaUGUc -3'
miRNA:   3'- cGCGGCGU---UGGGGUACU------------UCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 81390 0.74 0.343659
Target:  5'- cGCGCCGCGGCgCCCAgGuuGGCCaggGUg -3'
miRNA:   3'- -CGCGGCGUUG-GGGUaCuuCCGGga-CA- -5'
29385 3' -58.9 NC_006151.1 + 12028 0.73 0.367056
Target:  5'- cCGgCGCAACCCC----GGGCCCUGa -3'
miRNA:   3'- cGCgGCGUUGGGGuacuUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 105350 0.73 0.391526
Target:  5'- cGCGCUGCAGacggcgaCCAUGGAGGUgCUGg -3'
miRNA:   3'- -CGCGGCGUUgg-----GGUACUUCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 130376 0.73 0.391526
Target:  5'- cGCGCCGCGGCgUCCAgcgcGAAGGCCa--- -3'
miRNA:   3'- -CGCGGCGUUG-GGGUa---CUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 18750 0.73 0.391526
Target:  5'- cCGCCGgGGCCCCAcGggGuGCCCgGg -3'
miRNA:   3'- cGCGGCgUUGGGGUaCuuC-CGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 15228 0.72 0.399916
Target:  5'- aGCGCCccuCGGCCCCcugcUGGcAGGCCCUGc -3'
miRNA:   3'- -CGCGGc--GUUGGGGu---ACU-UCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 55453 0.72 0.40842
Target:  5'- gGCGCCGcCGGCCCCGccgGggGGCgCg-- -3'
miRNA:   3'- -CGCGGC-GUUGGGGUa--CuuCCGgGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.