miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 3' -58.9 NC_006151.1 + 105350 0.73 0.391526
Target:  5'- cGCGCUGCAGacggcgaCCAUGGAGGUgCUGg -3'
miRNA:   3'- -CGCGGCGUUgg-----GGUACUUCCGgGACa -5'
29385 3' -58.9 NC_006151.1 + 104806 0.66 0.73817
Target:  5'- uGCGCCGCGACCUgGcGgcGGCgCg-- -3'
miRNA:   3'- -CGCGGCGUUGGGgUaCuuCCGgGaca -5'
29385 3' -58.9 NC_006151.1 + 104526 0.66 0.751616
Target:  5'- cCGCCGCGgcuuCCCCGaguacgaggccgagcUGGccGCCCUGg -3'
miRNA:   3'- cGCGGCGUu---GGGGU---------------ACUucCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 103914 0.72 0.434594
Target:  5'- gGCGCgCGCGGCCgCCGUGGAGGagCCg-- -3'
miRNA:   3'- -CGCG-GCGUUGG-GGUACUUCCg-GGaca -5'
29385 3' -58.9 NC_006151.1 + 103856 0.66 0.747794
Target:  5'- uGCGCgCGCAGCCCgAcGAGGGgaCgCUGg -3'
miRNA:   3'- -CGCG-GCGUUGGGgUaCUUCCg-G-GACa -5'
29385 3' -58.9 NC_006151.1 + 103173 0.69 0.597893
Target:  5'- cGCGCUuCGACgCCAUGGAcgccGCCCUGg -3'
miRNA:   3'- -CGCGGcGUUGgGGUACUUc---CGGGACa -5'
29385 3' -58.9 NC_006151.1 + 99698 0.74 0.328668
Target:  5'- gGCGCCGgggaGACgCCCAUGGAGGCgCCg-- -3'
miRNA:   3'- -CGCGGCg---UUG-GGGUACUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 99124 0.71 0.480282
Target:  5'- gGCGCUGCugGACCCCggGGcgcAGGCCgUGc -3'
miRNA:   3'- -CGCGGCG--UUGGGGuaCU---UCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 98631 0.69 0.557773
Target:  5'- uGCGCCGC--CUUCGacGAGGCCCUGg -3'
miRNA:   3'- -CGCGGCGuuGGGGUacUUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 96521 0.68 0.658661
Target:  5'- cGCGCuCGUccaCCCGggaGAAGGCCUUGa -3'
miRNA:   3'- -CGCG-GCGuugGGGUa--CUUCCGGGACa -5'
29385 3' -58.9 NC_006151.1 + 95223 0.69 0.567742
Target:  5'- uGCGCCGCAcGCCCUcgaccGAGGcGCCCgucggGUa -3'
miRNA:   3'- -CGCGGCGU-UGGGGua---CUUC-CGGGa----CA- -5'
29385 3' -58.9 NC_006151.1 + 95136 0.66 0.73817
Target:  5'- gGCGCCGC-GCCgCCggGucGGCCaUGUc -3'
miRNA:   3'- -CGCGGCGuUGG-GGuaCuuCCGGgACA- -5'
29385 3' -58.9 NC_006151.1 + 94768 0.69 0.577756
Target:  5'- gGCGCCGCAGCgucUCCAUGAGcGGCaggUUGg -3'
miRNA:   3'- -CGCGGCGUUG---GGGUACUU-CCGg--GACa -5'
29385 3' -58.9 NC_006151.1 + 91293 0.68 0.668762
Target:  5'- cGCGCCGCGucagcagccGCgCCggGAAGGCgCCg-- -3'
miRNA:   3'- -CGCGGCGU---------UGgGGuaCUUCCG-GGaca -5'
29385 3' -58.9 NC_006151.1 + 90099 0.67 0.728455
Target:  5'- cGCGCCGCAggccgcggcgACgCCCAUGAcgAGGCa---- -3'
miRNA:   3'- -CGCGGCGU----------UG-GGGUACU--UCCGggaca -5'
29385 3' -58.9 NC_006151.1 + 89545 0.67 0.708789
Target:  5'- aGCGCCG-AGgCCgGUGGAGGCCg--- -3'
miRNA:   3'- -CGCGGCgUUgGGgUACUUCCGGgaca -5'
29385 3' -58.9 NC_006151.1 + 88398 0.66 0.766735
Target:  5'- gGCGuCCGCGGCCgCG---AGGCCCgGg -3'
miRNA:   3'- -CGC-GGCGUUGGgGUacuUCCGGGaCa -5'
29385 3' -58.9 NC_006151.1 + 86298 0.66 0.747794
Target:  5'- gGCGUCGUcaacuGCCCgCAgcUGggGGCCgUGc -3'
miRNA:   3'- -CGCGGCGu----UGGG-GU--ACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 86236 0.69 0.567742
Target:  5'- cGCGCUGCGACaucggcgCCGUGcuGGCCgUGg -3'
miRNA:   3'- -CGCGGCGUUGg------GGUACuuCCGGgACa -5'
29385 3' -58.9 NC_006151.1 + 86185 0.75 0.267246
Target:  5'- cCGCCGCGcuGCCCCcgGcGGGCCCg-- -3'
miRNA:   3'- cGCGGCGU--UGGGGuaCuUCCGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.