miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 27384 0.68 0.909607
Target:  5'- gGGCGAGaACGg-CGGGGAGGGCacgGGCu -3'
miRNA:   3'- gCUGCUUcUGCgaGUUCCUCCUG---CCG- -5'
29385 5' -54.3 NC_006151.1 + 27450 0.74 0.57526
Target:  5'- gGACGcGGugGgUCGGGGGcGGGCGGUc -3'
miRNA:   3'- gCUGCuUCugCgAGUUCCU-CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 27488 0.67 0.931936
Target:  5'- uCGGCGggGugGUgggaaCGGGGuGGGAgGGg -3'
miRNA:   3'- -GCUGCuuCugCGa----GUUCC-UCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 27522 0.74 0.605849
Target:  5'- gCGAUGggGGCGUggGGGGGGGGgGGg -3'
miRNA:   3'- -GCUGCuuCUGCGagUUCCUCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 27644 0.69 0.876396
Target:  5'- gGugGggGugGCUgGAuGGAuuGGAUGGa -3'
miRNA:   3'- gCugCuuCugCGAgUU-CCU--CCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 28075 0.66 0.958655
Target:  5'- cCGACGucaccgucgucguccGGGCGUccUCGAGcGGGGcGCGGCu -3'
miRNA:   3'- -GCUGCu--------------UCUGCG--AGUUC-CUCC-UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29411 0.75 0.545036
Target:  5'- cCGcGCGGAGAagGCUCGGuguggccgcGGGGGGCGGCg -3'
miRNA:   3'- -GC-UGCUUCUg-CGAGUU---------CCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29453 0.66 0.958286
Target:  5'- aGA-GggGACGCggAGGGAgcGGGCGcGCc -3'
miRNA:   3'- gCUgCuuCUGCGagUUCCU--CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 29524 0.67 0.936919
Target:  5'- gCGAUGAAGACGgaUGAGcGGGGcgaugaAUGGCc -3'
miRNA:   3'- -GCUGCUUCUGCgaGUUC-CUCC------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29609 0.67 0.926714
Target:  5'- gCGGCGggGGCuGgUguGGGAGGAgUGGg -3'
miRNA:   3'- -GCUGCuuCUG-CgAguUCCUCCU-GCCg -5'
29385 5' -54.3 NC_006151.1 + 30259 0.71 0.784319
Target:  5'- aGACGAcGGGCGC-CAcagacagcggcgcGGGGGGAgGGUg -3'
miRNA:   3'- gCUGCU-UCUGCGaGU-------------UCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 30408 0.69 0.869079
Target:  5'- uCGACGGggAGAgGaaggaGGGGAGGACGGa -3'
miRNA:   3'- -GCUGCU--UCUgCgag--UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 30762 0.66 0.957167
Target:  5'- gGGCGggGGCagcacucagcgaagGCUCAGGGuGuuccagccGAUGGCc -3'
miRNA:   3'- gCUGCuuCUG--------------CGAGUUCCuC--------CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 30841 0.78 0.379145
Target:  5'- gGGCGGAGAgGagCGAGGAGGACuGGCg -3'
miRNA:   3'- gCUGCUUCUgCgaGUUCCUCCUG-CCG- -5'
29385 5' -54.3 NC_006151.1 + 30866 0.67 0.936919
Target:  5'- nCGGCGgcGGCG---GAGGAGGggggaagagGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCgagUUCCUCC---------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 30987 0.73 0.657117
Target:  5'- gGACGggGACGgg-GAGGAGGAgGGa -3'
miRNA:   3'- gCUGCuuCUGCgagUUCCUCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 31569 0.69 0.869079
Target:  5'- -cGCGA--ACGUgaUCAcGGGGGGGCGGCg -3'
miRNA:   3'- gcUGCUucUGCG--AGU-UCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 31644 0.72 0.737626
Target:  5'- gCGcACGcGGGCGCgcggggAGGGAGGAgGGCg -3'
miRNA:   3'- -GC-UGCuUCUGCGag----UUCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 31748 0.66 0.946168
Target:  5'- gCGcCGggGACGCgccugCGGcGGcGGGCGcGCg -3'
miRNA:   3'- -GCuGCuuCUGCGa----GUU-CCuCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 32100 0.78 0.386623
Target:  5'- gGACGcggggaaGAGACGCggaGAGGGGGACGGg -3'
miRNA:   3'- gCUGC-------UUCUGCGag-UUCCUCCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.