miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 15786 0.78 0.404446
Target:  5'- aCGAgGAGGACGaggaaGGGGAGGACGGg -3'
miRNA:   3'- -GCUgCUUCUGCgag--UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 15847 0.83 0.196092
Target:  5'- aGACGAAGACGgagagggCGAGGAGGGCGGg -3'
miRNA:   3'- gCUGCUUCUGCga-----GUUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 17123 0.7 0.803383
Target:  5'- cCGGCGgcGGUGCUgcGGGAGG-CGGCc -3'
miRNA:   3'- -GCUGCuuCUGCGAguUCCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 17672 0.66 0.954476
Target:  5'- cCGACGAgaggaacagcagAGACGCggaGAcGAGGAaGGCu -3'
miRNA:   3'- -GCUGCU------------UCUGCGag-UUcCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 17808 0.67 0.921251
Target:  5'- gGACccccccuccuGGGCGCggCGGGGcGGGCGGCc -3'
miRNA:   3'- gCUGcu--------UCUGCGa-GUUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 18121 0.76 0.490151
Target:  5'- gGACGggGGCGCUggggucgaacgugucCAugucGGcGGGGGCGGCg -3'
miRNA:   3'- gCUGCuuCUGCGA---------------GU----UC-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 18930 0.67 0.931936
Target:  5'- uCGcCGAAGGCGUcgAAGGGGcaGGCGGUc -3'
miRNA:   3'- -GCuGCUUCUGCGagUUCCUC--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 19437 0.69 0.853023
Target:  5'- uGACGAuGGGCgGCUCGcgcuGGAgccgcggcaccucGGGCGGCa -3'
miRNA:   3'- gCUGCU-UCUG-CGAGUu---CCU-------------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 19856 0.73 0.667344
Target:  5'- uCGGCGGAGAgGCUCGGGGccucGGugGagaGCg -3'
miRNA:   3'- -GCUGCUUCUgCGAGUUCCu---CCugC---CG- -5'
29385 5' -54.3 NC_006151.1 + 20120 0.73 0.667344
Target:  5'- cCGGCGAcGGgGCUgGGGGgcgggcgccgcgGGGGCGGCg -3'
miRNA:   3'- -GCUGCUuCUgCGAgUUCC------------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 20496 0.67 0.941662
Target:  5'- uCGuCGgcGGCucugGCUCGAucGGGGGCGGCg -3'
miRNA:   3'- -GCuGCuuCUG----CGAGUUc-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 20611 0.67 0.941662
Target:  5'- gGACGAcGGCGUgggguggUggGGGcgcccccuGGGCGGCa -3'
miRNA:   3'- gCUGCUuCUGCGa------GuuCCU--------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 20962 0.67 0.926714
Target:  5'- cCGuCGAucgucagguuGGGCGCgucgcCGGGcacGAGGACGGCg -3'
miRNA:   3'- -GCuGCU----------UCUGCGa----GUUC---CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21047 0.72 0.707874
Target:  5'- gGACGcccccGACGCgCGGGGucAGGGCGGCc -3'
miRNA:   3'- gCUGCuu---CUGCGaGUUCC--UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21318 0.68 0.909607
Target:  5'- uGGCGcGAGACGCccggcgCGGcGGGGGuccGCGGCu -3'
miRNA:   3'- gCUGC-UUCUGCGa-----GUU-CCUCC---UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21411 0.67 0.941662
Target:  5'- gGGCGGugcGGCGuCUCGGgccucGGGGGucGCGGCg -3'
miRNA:   3'- gCUGCUu--CUGC-GAGUU-----CCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21574 0.69 0.861547
Target:  5'- cCGcCGAGGGcCGCgCGGGGucGAUGGCg -3'
miRNA:   3'- -GCuGCUUCU-GCGaGUUCCucCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 23010 0.67 0.930911
Target:  5'- gGGUGggGGCGCgggggugguGGAGG-CGGCg -3'
miRNA:   3'- gCUGCuuCUGCGaguu-----CCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 26333 0.73 0.677541
Target:  5'- gGGCGAGGccCGcCUCAcGGGGcGGCGGCg -3'
miRNA:   3'- gCUGCUUCu-GC-GAGUuCCUC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 27283 0.68 0.883494
Target:  5'- aCGACGuAGcgcccGCGCUUggGGGGcGugGGg -3'
miRNA:   3'- -GCUGCuUC-----UGCGAGuuCCUC-CugCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.