miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 6423 0.67 0.926714
Target:  5'- gCGGCGGAGAag---AAGGAGGAaGGCg -3'
miRNA:   3'- -GCUGCUUCUgcgagUUCCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 8079 0.68 0.890368
Target:  5'- gCGACGGggcguggcgGGGCGUggcaGAGGGGGAgGGg -3'
miRNA:   3'- -GCUGCU---------UCUGCGag--UUCCUCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 8192 0.69 0.853808
Target:  5'- gGAcccCGggGGCGCUCcGGGAGacgaaGAgGGCc -3'
miRNA:   3'- gCU---GCuuCUGCGAGuUCCUC-----CUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 8679 0.66 0.958286
Target:  5'- cCGACGGuGGugGC-C-GGGcGGGCGGUc -3'
miRNA:   3'- -GCUGCU-UCugCGaGuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 9626 0.66 0.958286
Target:  5'- gCGGCGAGGGgggaaGCgggaGGGaGAGGcGCGGCg -3'
miRNA:   3'- -GCUGCUUCUg----CGag--UUC-CUCC-UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 10014 0.66 0.950438
Target:  5'- gCGGCGgcGGCGgUCGccgcggccAGGAGGAaaaaCGGg -3'
miRNA:   3'- -GCUGCuuCUGCgAGU--------UCCUCCU----GCCg -5'
29385 5' -54.3 NC_006151.1 + 10223 0.7 0.794386
Target:  5'- aGGCGGcugcGGACGCg-GAGGGGGGCGa- -3'
miRNA:   3'- gCUGCU----UCUGCGagUUCCUCCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 10347 0.69 0.861547
Target:  5'- uGACGcAGGACGCgggaGGGGAGGGgaGGg -3'
miRNA:   3'- gCUGC-UUCUGCGag--UUCCUCCUg-CCg -5'
29385 5' -54.3 NC_006151.1 + 10459 0.72 0.737626
Target:  5'- gGAgGAGGACGCggcggCGgugaAGGAGGAgagccgccCGGCg -3'
miRNA:   3'- gCUgCUUCUGCGa----GU----UCCUCCU--------GCCG- -5'
29385 5' -54.3 NC_006151.1 + 11689 0.67 0.941662
Target:  5'- cCGACGggGcCGC------GGGACGGCg -3'
miRNA:   3'- -GCUGCuuCuGCGaguuccUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 11807 0.76 0.467418
Target:  5'- gGGCGggGugGggUggGGGGcGGCGGCg -3'
miRNA:   3'- gCUGCuuCugCgaGuuCCUC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 12355 0.66 0.961871
Target:  5'- gGGCGggGAgCGCgagCGGGaGAaGGuuGGCg -3'
miRNA:   3'- gCUGCuuCU-GCGa--GUUC-CU-CCugCCG- -5'
29385 5' -54.3 NC_006151.1 + 14151 0.75 0.555059
Target:  5'- cCGACGAGGAgccgcgcccCGCUCGAGGAcgcccGGACGa- -3'
miRNA:   3'- -GCUGCUUCU---------GCGAGUUCCU-----CCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 15475 0.73 0.646871
Target:  5'- gGACGAGGACGaa-GAGGAaGACGGg -3'
miRNA:   3'- gCUGCUUCUGCgagUUCCUcCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 15508 0.72 0.737626
Target:  5'- aGACGAGGACGag-GAGGGGGAagaGGa -3'
miRNA:   3'- gCUGCUUCUGCgagUUCCUCCUg--CCg -5'
29385 5' -54.3 NC_006151.1 + 15559 0.73 0.646871
Target:  5'- gGACGAggacggggagacGGACGUguaCGAGGAGGACGa- -3'
miRNA:   3'- gCUGCU------------UCUGCGa--GUUCCUCCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 15607 0.8 0.29581
Target:  5'- gGACGAGGA-GgaCGAGGAGGACGGg -3'
miRNA:   3'- gCUGCUUCUgCgaGUUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 15657 0.74 0.616094
Target:  5'- gCGACGAcGACGUguUUGAGccccccGAGGACGGCu -3'
miRNA:   3'- -GCUGCUuCUGCG--AGUUC------CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15694 0.72 0.707874
Target:  5'- gGACGGAGAgGgCUCGGgcucGGAcGACGGCg -3'
miRNA:   3'- gCUGCUUCUgC-GAGUU----CCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15754 0.68 0.897014
Target:  5'- aGAUGAAGACGaggaCGAGGAcGAUGGa -3'
miRNA:   3'- gCUGCUUCUGCga--GUUCCUcCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.