miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 130883 0.67 0.936919
Target:  5'- gGGCGgcGGCGgUgGAGGcGG-CGGCc -3'
miRNA:   3'- gCUGCuuCUGCgAgUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 130687 0.71 0.756054
Target:  5'- gCGGCGcAGGAUGUcCGGGGgcccgacGGGGCGGCc -3'
miRNA:   3'- -GCUGC-UUCUGCGaGUUCC-------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 130311 0.68 0.909607
Target:  5'- -cGCGGAGcgcgcgcgccgcGCGCUCGGGGAGcucgcgcgccGCGGCg -3'
miRNA:   3'- gcUGCUUC------------UGCGAGUUCCUCc---------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 127904 0.71 0.747371
Target:  5'- cCGAgcuCGggGGCccCUCGGGGAgcggGGGCGGCg -3'
miRNA:   3'- -GCU---GCuuCUGc-GAGUUCCU----CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 127707 0.66 0.950438
Target:  5'- gCGACGA----GCUCGuGGAGGcccCGGCg -3'
miRNA:   3'- -GCUGCUucugCGAGUuCCUCCu--GCCG- -5'
29385 5' -54.3 NC_006151.1 + 127371 0.66 0.961871
Target:  5'- gGGCGggGAcCGCggggguggCGGGGGccGCGGCc -3'
miRNA:   3'- gCUGCuuCU-GCGa-------GUUCCUccUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 126274 0.66 0.954476
Target:  5'- uCGACGAAGGCGaCguggaCGAGGccaagcuGGACcaGGCc -3'
miRNA:   3'- -GCUGCUUCUGC-Ga----GUUCCu------CCUG--CCG- -5'
29385 5' -54.3 NC_006151.1 + 126246 1.13 0.002376
Target:  5'- aCGACGAAGACGCUCAAGGAGGACGGCg -3'
miRNA:   3'- -GCUGCUUCUGCGAGUUCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 125257 0.68 0.897014
Target:  5'- cCGGCGggGACGCcCGAGccgccGGccgucaACGGCa -3'
miRNA:   3'- -GCUGCuuCUGCGaGUUCcu---CC------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 124053 0.66 0.958286
Target:  5'- aCGGCGAccuGGACGCgc-----GGACGGCc -3'
miRNA:   3'- -GCUGCU---UCUGCGaguuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 123985 0.69 0.876396
Target:  5'- -cGCGGAGGCGUcccUCGAGGAGaucgaGGCg -3'
miRNA:   3'- gcUGCUUCUGCG---AGUUCCUCcug--CCG- -5'
29385 5' -54.3 NC_006151.1 + 122945 0.73 0.677541
Target:  5'- cCGACGgcGGCGCcgCGGGGGGcGCGGa -3'
miRNA:   3'- -GCUGCuuCUGCGa-GUUCCUCcUGCCg -5'
29385 5' -54.3 NC_006151.1 + 122697 0.66 0.961871
Target:  5'- cCGugGAGcucGCGCUCuucGGGcGGCGGCc -3'
miRNA:   3'- -GCugCUUc--UGCGAGuu-CCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 122462 0.71 0.775958
Target:  5'- aCGGCGGcggcGGGCGC-CGAGGccgGGGACgcgGGCg -3'
miRNA:   3'- -GCUGCU----UCUGCGaGUUCC---UCCUG---CCG- -5'
29385 5' -54.3 NC_006151.1 + 121956 0.69 0.841008
Target:  5'- cCGGCGAcGACGC-CGAGGccuAcuuugagcgcaccauGGGCGGCg -3'
miRNA:   3'- -GCUGCUuCUGCGaGUUCC---U---------------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 121306 0.68 0.883494
Target:  5'- gCGACG--GGCGCUgGAgcguGGAGG-CGGCc -3'
miRNA:   3'- -GCUGCuuCUGCGAgUU----CCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 120164 0.68 0.903428
Target:  5'- uGACGguGACGCUCGcc---GACGGCa -3'
miRNA:   3'- gCUGCuuCUGCGAGUuccucCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 120119 0.68 0.89636
Target:  5'- gCGugGuGGACauGCUCAAcGGGGGcuucgucACGGCc -3'
miRNA:   3'- -GCugCuUCUG--CGAGUU-CCUCC-------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 119187 0.74 0.593581
Target:  5'- aCGACGcGGGCGCcgccgacgcgcgCAAGGAGGGCgccGGCc -3'
miRNA:   3'- -GCUGCuUCUGCGa-----------GUUCCUCCUG---CCG- -5'
29385 5' -54.3 NC_006151.1 + 119031 0.75 0.555059
Target:  5'- cCGAgGcGGGCGC-CAAGGAcGGCGGCg -3'
miRNA:   3'- -GCUgCuUCUGCGaGUUCCUcCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.