miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 142243 0.68 0.909607
Target:  5'- gCGACGAGGcgucggucauCGCggCGAGGAGcgccccgucccGGCGGCc -3'
miRNA:   3'- -GCUGCUUCu---------GCGa-GUUCCUC-----------CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 141652 0.66 0.949181
Target:  5'- gCGGCGggGccccgcGgGCUCGuuguGGAGGcaugucugccucccACGGCg -3'
miRNA:   3'- -GCUGCuuC------UgCGAGUu---CCUCC--------------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 141439 0.7 0.829406
Target:  5'- -cGCGAAcGACGUcCccguAGGAGGGCGGUc -3'
miRNA:   3'- gcUGCUU-CUGCGaGu---UCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 139996 0.7 0.829406
Target:  5'- aCGugGGAGACGCUCAuguuccacgGGGccGACcuGCa -3'
miRNA:   3'- -GCugCUUCUGCGAGU---------UCCucCUGc-CG- -5'
29385 5' -54.3 NC_006151.1 + 139639 0.66 0.958286
Target:  5'- cCGGCGccGGCGC----GGGGGucGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCGaguuCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 139193 0.66 0.954476
Target:  5'- uGGCGGucgGGGCGCUgGAGcuccuGGCGGCg -3'
miRNA:   3'- gCUGCU---UCUGCGAgUUCcuc--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 138618 0.76 0.476826
Target:  5'- uCGGCGAGGACGC-CGccGGGGGCGcGCc -3'
miRNA:   3'- -GCUGCUUCUGCGaGUucCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 137606 0.67 0.915548
Target:  5'- gGAuCGggGGCGCgggCGGGGAcccCGGCg -3'
miRNA:   3'- gCU-GCuuCUGCGa--GUUCCUccuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 137459 0.69 0.869079
Target:  5'- cCGACGAcGGC-CUCGAGGAGG-CGc- -3'
miRNA:   3'- -GCUGCUuCUGcGAGUUCCUCCuGCcg -5'
29385 5' -54.3 NC_006151.1 + 137108 0.69 0.83773
Target:  5'- uGGcCGggGACGC-CuGGGGGcgcgcGACGGCg -3'
miRNA:   3'- gCU-GCuuCUGCGaGuUCCUC-----CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 136640 0.7 0.820042
Target:  5'- gCGGCGcccguGGGGCGCUCGccccucgGGGAGcGcGCGGCc -3'
miRNA:   3'- -GCUGC-----UUCUGCGAGU-------UCCUC-C-UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 135956 0.69 0.83773
Target:  5'- gCGGCGcGGGACGUccUCGAGGccauGGACgaGGCg -3'
miRNA:   3'- -GCUGC-UUCUGCG--AGUUCCu---CCUG--CCG- -5'
29385 5' -54.3 NC_006151.1 + 135531 0.66 0.946168
Target:  5'- uCGGCGgcGA-GCggggCGGGGAGGAucacguugagcaCGGCc -3'
miRNA:   3'- -GCUGCuuCUgCGa---GUUCCUCCU------------GCCG- -5'
29385 5' -54.3 NC_006151.1 + 135086 0.73 0.636613
Target:  5'- gGGCGggGGCgGCggggCcGGGcGGGCGGCg -3'
miRNA:   3'- gCUGCuuCUG-CGa---GuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 135007 0.75 0.545036
Target:  5'- uGGCGggGGCGC---GGGGGGGCaGCa -3'
miRNA:   3'- gCUGCuuCUGCGaguUCCUCCUGcCG- -5'
29385 5' -54.3 NC_006151.1 + 133283 0.66 0.958286
Target:  5'- cCGGCGgcGGCcCacgUCGAGGuucuccccgGGGGCGGCc -3'
miRNA:   3'- -GCUGCuuCUGcG---AGUUCC---------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 131896 0.66 0.946168
Target:  5'- aCGGcCGAGGGCGac----GGGGGCGGCa -3'
miRNA:   3'- -GCU-GCUUCUGCgaguucCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 131733 0.67 0.941662
Target:  5'- aGGCGggGugGCgggccCGGGcGAGGcgaccgucGCGGUc -3'
miRNA:   3'- gCUGCuuCugCGa----GUUC-CUCC--------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 131104 0.69 0.875674
Target:  5'- uCGGCGggGGgcccggcCGCggCGcGGGAGGccGCGGCg -3'
miRNA:   3'- -GCUGCuuCU-------GCGa-GU-UCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 130946 0.69 0.876396
Target:  5'- gCGGCGggGggucGCGCgggCGcGGGGGcCGGUa -3'
miRNA:   3'- -GCUGCuuC----UGCGa--GUuCCUCCuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.