miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 105484 0.76 0.476826
Target:  5'- gCGACGccGGUGCcgUCGAGGAGGACGuGCg -3'
miRNA:   3'- -GCUGCuuCUGCG--AGUUCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 64849 0.76 0.486326
Target:  5'- cCGGCGAGGGC-CUCGGcGGAGGGCcGCu -3'
miRNA:   3'- -GCUGCUUCUGcGAGUU-CCUCCUGcCG- -5'
29385 5' -54.3 NC_006151.1 + 18121 0.76 0.490151
Target:  5'- gGACGggGGCGCUggggucgaacgugucCAugucGGcGGGGGCGGCg -3'
miRNA:   3'- gCUGCuuCUGCGA---------------GU----UC-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 40202 0.76 0.495915
Target:  5'- aCGACGAGGAgGC-CGAGGAcGcCGGCa -3'
miRNA:   3'- -GCUGCUUCUgCGaGUUCCUcCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 55046 0.76 0.505589
Target:  5'- cCGugGAgaAGAUGCUCGGcGAGGAccCGGCg -3'
miRNA:   3'- -GCugCU--UCUGCGAGUUcCUCCU--GCCG- -5'
29385 5' -54.3 NC_006151.1 + 2300 0.76 0.515343
Target:  5'- gCGGCGAcGGCGCcCGGGGucagcaccagcGGGGCGGCc -3'
miRNA:   3'- -GCUGCUuCUGCGaGUUCC-----------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 42989 0.75 0.535072
Target:  5'- aGAa-GAGAUGCg-GGGGAGGGCGGCg -3'
miRNA:   3'- gCUgcUUCUGCGagUUCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29411 0.75 0.545036
Target:  5'- cCGcGCGGAGAagGCUCGGuguggccgcGGGGGGCGGCg -3'
miRNA:   3'- -GC-UGCUUCUg-CGAGUU---------CCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 135007 0.75 0.545036
Target:  5'- uGGCGggGGCGC---GGGGGGGCaGCa -3'
miRNA:   3'- gCUGCuuCUGCGaguUCCUCCUGcCG- -5'
29385 5' -54.3 NC_006151.1 + 119031 0.75 0.555059
Target:  5'- cCGAgGcGGGCGC-CAAGGAcGGCGGCg -3'
miRNA:   3'- -GCUgCuUCUGCGaGUUCCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 14151 0.75 0.555059
Target:  5'- cCGACGAGGAgccgcgcccCGCUCGAGGAcgcccGGACGa- -3'
miRNA:   3'- -GCUGCUUCU---------GCGAGUUCCU-----CCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 84389 0.75 0.565136
Target:  5'- -cGCGggGACGggCGGGGAgcgGGugGGCg -3'
miRNA:   3'- gcUGCuuCUGCgaGUUCCU---CCugCCG- -5'
29385 5' -54.3 NC_006151.1 + 27450 0.74 0.57526
Target:  5'- gGACGcGGugGgUCGGGGGcGGGCGGUc -3'
miRNA:   3'- gCUGCuUCugCgAGUUCCU-CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 68441 0.74 0.57526
Target:  5'- gCGGCGGcacAGGCGCUCGAGcacGGGGuccaccagcGCGGCg -3'
miRNA:   3'- -GCUGCU---UCUGCGAGUUC---CUCC---------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 57206 0.74 0.57526
Target:  5'- aGGCGAAGGCccGCUCGAcGAGGccgucgcagGCGGCg -3'
miRNA:   3'- gCUGCUUCUG--CGAGUUcCUCC---------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 3385 0.74 0.57526
Target:  5'- gCGGCGAGGGcCGC-CucGGAGGgccGCGGCg -3'
miRNA:   3'- -GCUGCUUCU-GCGaGuuCCUCC---UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 104609 0.74 0.582371
Target:  5'- gCGGCGccGAGaucugccgcGCGCUCGAGGAGGugacguacgugcgcGCGGCc -3'
miRNA:   3'- -GCUGC--UUC---------UGCGAGUUCCUCC--------------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 119187 0.74 0.593581
Target:  5'- aCGACGcGGGCGCcgccgacgcgcgCAAGGAGGGCgccGGCc -3'
miRNA:   3'- -GCUGCuUCUGCGa-----------GUUCCUCCUG---CCG- -5'
29385 5' -54.3 NC_006151.1 + 68293 0.74 0.595623
Target:  5'- aCGGCGGccAGGCGCgcgccCAcgacGGcGAGGGCGGCg -3'
miRNA:   3'- -GCUGCU--UCUGCGa----GU----UC-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 84723 0.74 0.595623
Target:  5'- gCGugGccGAGGCGCUCGuggugcucgAGGAG-ACGGCg -3'
miRNA:   3'- -GCugC--UUCUGCGAGU---------UCCUCcUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.