miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 27522 0.74 0.605849
Target:  5'- gCGAUGggGGCGUggGGGGGGGGgGGg -3'
miRNA:   3'- -GCUGCuuCUGCGagUUCCUCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 15657 0.74 0.616094
Target:  5'- gCGACGAcGACGUguUUGAGccccccGAGGACGGCu -3'
miRNA:   3'- -GCUGCUuCUGCG--AGUUC------CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 135086 0.73 0.636613
Target:  5'- gGGCGggGGCgGCggggCcGGGcGGGCGGCg -3'
miRNA:   3'- gCUGCuuCUG-CGa---GuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15475 0.73 0.646871
Target:  5'- gGACGAGGACGaa-GAGGAaGACGGg -3'
miRNA:   3'- gCUGCUUCUGCgagUUCCUcCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 15559 0.73 0.646871
Target:  5'- gGACGAggacggggagacGGACGUguaCGAGGAGGACGa- -3'
miRNA:   3'- gCUGCU------------UCUGCGa--GUUCCUCCUGCcg -5'
29385 5' -54.3 NC_006151.1 + 91532 0.73 0.657117
Target:  5'- aCGAgGAAGGCGUgcgCGAGGuGcGCGGCc -3'
miRNA:   3'- -GCUgCUUCUGCGa--GUUCCuCcUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 30987 0.73 0.657117
Target:  5'- gGACGggGACGgg-GAGGAGGAgGGa -3'
miRNA:   3'- gCUGCuuCUGCgagUUCCUCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 20120 0.73 0.667344
Target:  5'- cCGGCGAcGGgGCUgGGGGgcgggcgccgcgGGGGCGGCg -3'
miRNA:   3'- -GCUGCUuCUgCGAgUUCC------------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 19856 0.73 0.667344
Target:  5'- uCGGCGGAGAgGCUCGGGGccucGGugGagaGCg -3'
miRNA:   3'- -GCUGCUUCUgCGAGUUCCu---CCugC---CG- -5'
29385 5' -54.3 NC_006151.1 + 65803 0.73 0.667344
Target:  5'- cCGGCGcGGACGUgccgCGGuGGAuGGGCGGCc -3'
miRNA:   3'- -GCUGCuUCUGCGa---GUU-CCU-CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 90739 0.73 0.667344
Target:  5'- uGGCGgcGGCGCcCucGG-GGGCGGCg -3'
miRNA:   3'- gCUGCuuCUGCGaGuuCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 122945 0.73 0.677541
Target:  5'- cCGACGgcGGCGCcgCGGGGGGcGCGGa -3'
miRNA:   3'- -GCUGCuuCUGCGa-GUUCCUCcUGCCg -5'
29385 5' -54.3 NC_006151.1 + 100456 0.73 0.677541
Target:  5'- aCGACGGAGGCGCUgcgcgagugCGAGGcgcuGGGCcugcaGGCg -3'
miRNA:   3'- -GCUGCUUCUGCGA---------GUUCCu---CCUG-----CCG- -5'
29385 5' -54.3 NC_006151.1 + 26333 0.73 0.677541
Target:  5'- gGGCGAGGccCGcCUCAcGGGGcGGCGGCg -3'
miRNA:   3'- gCUGCUUCu-GC-GAGUuCCUC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 33076 0.72 0.687701
Target:  5'- aGACGGAGGgGg-CGAGGGcGGGCGGUg -3'
miRNA:   3'- gCUGCUUCUgCgaGUUCCU-CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 4259 0.72 0.697816
Target:  5'- gGGCaGcAGGCGCUCGAGGAcGccGCGGCa -3'
miRNA:   3'- gCUG-CuUCUGCGAGUUCCUcC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 15694 0.72 0.707874
Target:  5'- gGACGGAGAgGgCUCGGgcucGGAcGACGGCg -3'
miRNA:   3'- gCUGCUUCUgC-GAGUU----CCUcCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21047 0.72 0.707874
Target:  5'- gGACGcccccGACGCgCGGGGucAGGGCGGCc -3'
miRNA:   3'- gCUGCuu---CUGCGaGUUCC--UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 5841 0.72 0.707874
Target:  5'- aGGcCGggGAgGCUgcgGAGGGGGACGaGCg -3'
miRNA:   3'- gCU-GCuuCUgCGAg--UUCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 99696 0.72 0.727788
Target:  5'- aCGGCGccgggGAGACGCcCAuGGAGGcgccgacgagcGCGGCg -3'
miRNA:   3'- -GCUGC-----UUCUGCGaGUuCCUCC-----------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.