miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 96588 0.66 0.961871
Target:  5'- gCGGCGcGAGGCGC-CGGGcGcGGGCGcGCc -3'
miRNA:   3'- -GCUGC-UUCUGCGaGUUC-CuCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 99563 0.66 0.961871
Target:  5'- gCGGCGcgcgcGGCGCUgcugcgCGAGGuGG-CGGCg -3'
miRNA:   3'- -GCUGCuu---CUGCGA------GUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 114680 0.66 0.961871
Target:  5'- -cGCGAAGGCcucguGCUCgAAGGgcgcguccccgGGGGCGGUu -3'
miRNA:   3'- gcUGCUUCUG-----CGAG-UUCC-----------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 127371 0.66 0.961871
Target:  5'- gGGCGggGAcCGCggggguggCGGGGGccGCGGCc -3'
miRNA:   3'- gCUGCuuCU-GCGa-------GUUCCUccUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 12355 0.66 0.961871
Target:  5'- gGGCGggGAgCGCgagCGGGaGAaGGuuGGCg -3'
miRNA:   3'- gCUGCuuCU-GCGa--GUUC-CU-CCugCCG- -5'
29385 5' -54.3 NC_006151.1 + 124053 0.66 0.958286
Target:  5'- aCGGCGAccuGGACGCgc-----GGACGGCc -3'
miRNA:   3'- -GCUGCU---UCUGCGaguuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 104663 0.66 0.958286
Target:  5'- cCGACGcGGcgcgcGCGCUCGAcGAGGGgGuGCa -3'
miRNA:   3'- -GCUGCuUC-----UGCGAGUUcCUCCUgC-CG- -5'
29385 5' -54.3 NC_006151.1 + 103006 0.66 0.954476
Target:  5'- gGGCGAGGACGU--GAGcacGGACGaGCg -3'
miRNA:   3'- gCUGCUUCUGCGagUUCcu-CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 111336 0.66 0.954476
Target:  5'- gGGCGAGauGACGgUCGGgcGGAuGGGCGcGCg -3'
miRNA:   3'- gCUGCUU--CUGCgAGUU--CCU-CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 126274 0.66 0.954476
Target:  5'- uCGACGAAGGCGaCguggaCGAGGccaagcuGGACcaGGCc -3'
miRNA:   3'- -GCUGCUUCUGC-Ga----GUUCCu------CCUG--CCG- -5'
29385 5' -54.3 NC_006151.1 + 17672 0.66 0.954476
Target:  5'- cCGACGAgaggaacagcagAGACGCggaGAcGAGGAaGGCu -3'
miRNA:   3'- -GCUGCU------------UCUGCGag-UUcCUCCUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 30762 0.66 0.957167
Target:  5'- gGGCGggGGCagcacucagcgaagGCUCAGGGuGuuccagccGAUGGCc -3'
miRNA:   3'- gCUGCuuCUG--------------CGAGUUCCuC--------CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 68859 0.66 0.957167
Target:  5'- gCGACGcguccagcagcgccGGGGCGCgcccggccaCGucGAGGACGGCc -3'
miRNA:   3'- -GCUGC--------------UUCUGCGa--------GUucCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 9626 0.66 0.958286
Target:  5'- gCGGCGAGGGgggaaGCgggaGGGaGAGGcGCGGCg -3'
miRNA:   3'- -GCUGCUUCUg----CGag--UUC-CUCC-UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 4357 0.66 0.958286
Target:  5'- gGACGcGGGCGCagAGGGccucGACGGUc -3'
miRNA:   3'- gCUGCuUCUGCGagUUCCuc--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 5989 0.66 0.958286
Target:  5'- uGAUGGAGA-GCcCGAccGGGGGAccCGGCg -3'
miRNA:   3'- gCUGCUUCUgCGaGUU--CCUCCU--GCCG- -5'
29385 5' -54.3 NC_006151.1 + 29453 0.66 0.958286
Target:  5'- aGA-GggGACGCggAGGGAgcGGGCGcGCc -3'
miRNA:   3'- gCUgCuuCUGCGagUUCCU--CCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 8679 0.66 0.958286
Target:  5'- cCGACGGuGGugGC-C-GGGcGGGCGGUc -3'
miRNA:   3'- -GCUGCU-UCugCGaGuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 59480 0.66 0.958286
Target:  5'- cCGGCG-AGGCGCccUCGAaGAGcccGGCGGCc -3'
miRNA:   3'- -GCUGCuUCUGCG--AGUUcCUC---CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 71393 0.66 0.958286
Target:  5'- cCGACGGGcuguuUGCcugaGGGGAGGACGGg -3'
miRNA:   3'- -GCUGCUUcu---GCGag--UUCCUCCUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.