miRNA display CGI


Results 41 - 60 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 8679 0.66 0.958286
Target:  5'- cCGACGGuGGugGC-C-GGGcGGGCGGUc -3'
miRNA:   3'- -GCUGCU-UCugCGaGuUCCuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 59480 0.66 0.958286
Target:  5'- cCGGCG-AGGCGCccUCGAaGAGcccGGCGGCc -3'
miRNA:   3'- -GCUGCuUCUGCG--AGUUcCUC---CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 71393 0.66 0.958286
Target:  5'- cCGACGGGcuguuUGCcugaGGGGAGGACGGg -3'
miRNA:   3'- -GCUGCUUcu---GCGag--UUCCUCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 104663 0.66 0.958286
Target:  5'- cCGACGcGGcgcgcGCGCUCGAcGAGGGgGuGCa -3'
miRNA:   3'- -GCUGCuUC-----UGCGAGUUcCUCCUgC-CG- -5'
29385 5' -54.3 NC_006151.1 + 124053 0.66 0.958286
Target:  5'- aCGGCGAccuGGACGCgc-----GGACGGCc -3'
miRNA:   3'- -GCUGCU---UCUGCGaguuccuCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 133283 0.66 0.958286
Target:  5'- cCGGCGgcGGCcCacgUCGAGGuucuccccgGGGGCGGCc -3'
miRNA:   3'- -GCUGCuuCUGcG---AGUUCC---------UCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 139639 0.66 0.958286
Target:  5'- cCGGCGccGGCGC----GGGGGucGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCGaguuCCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 41482 0.67 0.941662
Target:  5'- aCGACGgcGAcCGCguggcgCGAGGggagccaauGGGGCGGg -3'
miRNA:   3'- -GCUGCuuCU-GCGa-----GUUCC---------UCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 131733 0.67 0.941662
Target:  5'- aGGCGggGugGCgggccCGGGcGAGGcgaccgucGCGGUc -3'
miRNA:   3'- gCUGCuuCugCGa----GUUC-CUCC--------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 111226 0.67 0.936919
Target:  5'- cCGGCG-AGGCGCcgCAgccccAGGAGGGUGuGCa -3'
miRNA:   3'- -GCUGCuUCUGCGa-GU-----UCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 29524 0.67 0.936919
Target:  5'- gCGAUGAAGACGgaUGAGcGGGGcgaugaAUGGCc -3'
miRNA:   3'- -GCUGCUUCUGCgaGUUC-CUCC------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 130883 0.67 0.936919
Target:  5'- gGGCGgcGGCGgUgGAGGcGG-CGGCc -3'
miRNA:   3'- gCUGCuuCUGCgAgUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 73816 0.67 0.941662
Target:  5'- -cGCGcauGGCGC-CGAGGuGGuCGGCg -3'
miRNA:   3'- gcUGCuu-CUGCGaGUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 80040 0.67 0.941662
Target:  5'- aCGGgGGAGGCgggagucugGCUguGGGAGaGAgGGCg -3'
miRNA:   3'- -GCUgCUUCUG---------CGAguUCCUC-CUgCCG- -5'
29385 5' -54.3 NC_006151.1 + 90112 0.67 0.941662
Target:  5'- gCGGCGAcgcccauGACGaggCAGGcGGGGCGGUa -3'
miRNA:   3'- -GCUGCUu------CUGCga-GUUCcUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 11689 0.67 0.941662
Target:  5'- cCGACGggGcCGC------GGGACGGCg -3'
miRNA:   3'- -GCUGCuuCuGCGaguuccUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 20496 0.67 0.941662
Target:  5'- uCGuCGgcGGCucugGCUCGAucGGGGGCGGCg -3'
miRNA:   3'- -GCuGCuuCUG----CGAGUUc-CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 20611 0.67 0.941662
Target:  5'- gGACGAcGGCGUgggguggUggGGGcgcccccuGGGCGGCa -3'
miRNA:   3'- gCUGCUuCUGCGa------GuuCCU--------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 21411 0.67 0.941662
Target:  5'- gGGCGGugcGGCGuCUCGGgccucGGGGGucGCGGCg -3'
miRNA:   3'- gCUGCUu--CUGC-GAGUU-----CCUCC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 30866 0.67 0.936919
Target:  5'- nCGGCGgcGGCG---GAGGAGGggggaagagGCGGCg -3'
miRNA:   3'- -GCUGCuuCUGCgagUUCCUCC---------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.