Results 41 - 60 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29385 | 5' | -54.3 | NC_006151.1 | + | 141652 | 0.66 | 0.949181 |
Target: 5'- gCGGCGggGccccgcGgGCUCGuuguGGAGGcaugucugccucccACGGCg -3' miRNA: 3'- -GCUGCuuC------UgCGAGUu---CCUCC--------------UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 99193 | 0.66 | 0.946168 |
Target: 5'- gGACGccacGGGCGUgu-GGGAGG-CGGUg -3' miRNA: 3'- gCUGCu---UCUGCGaguUCCUCCuGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 131896 | 0.66 | 0.946168 |
Target: 5'- aCGGcCGAGGGCGac----GGGGGCGGCa -3' miRNA: 3'- -GCU-GCUUCUGCgaguucCUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 31748 | 0.66 | 0.946168 |
Target: 5'- gCGcCGggGACGCgccugCGGcGGcGGGCGcGCg -3' miRNA: 3'- -GCuGCuuCUGCGa----GUU-CCuCCUGC-CG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 41167 | 0.66 | 0.946168 |
Target: 5'- gGACGAuGGugGUccugcgguggUCGAGGGGGGUGGg -3' miRNA: 3'- gCUGCU-UCugCG----------AGUUCCUCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 135531 | 0.66 | 0.946168 |
Target: 5'- uCGGCGgcGA-GCggggCGGGGAGGAucacguugagcaCGGCc -3' miRNA: 3'- -GCUGCuuCUgCGa---GUUCCUCCU------------GCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 36054 | 0.66 | 0.946168 |
Target: 5'- cCGGCGAGGAUcucCUCuucGGcccGGGCGGCc -3' miRNA: 3'- -GCUGCUUCUGc--GAGuu-CCu--CCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 131733 | 0.67 | 0.941662 |
Target: 5'- aGGCGggGugGCgggccCGGGcGAGGcgaccgucGCGGUc -3' miRNA: 3'- gCUGCuuCugCGa----GUUC-CUCC--------UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 41482 | 0.67 | 0.941662 |
Target: 5'- aCGACGgcGAcCGCguggcgCGAGGggagccaauGGGGCGGg -3' miRNA: 3'- -GCUGCuuCU-GCGa-----GUUCC---------UCCUGCCg -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 73816 | 0.67 | 0.941662 |
Target: 5'- -cGCGcauGGCGC-CGAGGuGGuCGGCg -3' miRNA: 3'- gcUGCuu-CUGCGaGUUCCuCCuGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 80040 | 0.67 | 0.941662 |
Target: 5'- aCGGgGGAGGCgggagucugGCUguGGGAGaGAgGGCg -3' miRNA: 3'- -GCUgCUUCUG---------CGAguUCCUC-CUgCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 90112 | 0.67 | 0.941662 |
Target: 5'- gCGGCGAcgcccauGACGaggCAGGcGGGGCGGUa -3' miRNA: 3'- -GCUGCUu------CUGCga-GUUCcUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 11689 | 0.67 | 0.941662 |
Target: 5'- cCGACGggGcCGC------GGGACGGCg -3' miRNA: 3'- -GCUGCuuCuGCGaguuccUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 20496 | 0.67 | 0.941662 |
Target: 5'- uCGuCGgcGGCucugGCUCGAucGGGGGCGGCg -3' miRNA: 3'- -GCuGCuuCUG----CGAGUUc-CUCCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 20611 | 0.67 | 0.941662 |
Target: 5'- gGACGAcGGCGUgggguggUggGGGcgcccccuGGGCGGCa -3' miRNA: 3'- gCUGCUuCUGCGa------GuuCCU--------CCUGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 21411 | 0.67 | 0.941662 |
Target: 5'- gGGCGGugcGGCGuCUCGGgccucGGGGGucGCGGCg -3' miRNA: 3'- gCUGCUu--CUGC-GAGUU-----CCUCC--UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 66889 | 0.67 | 0.941662 |
Target: 5'- cCGGCcccgcgccgGAGGACGC-CGccGAGGAgGGCc -3' miRNA: 3'- -GCUG---------CUUCUGCGaGUucCUCCUgCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 29524 | 0.67 | 0.936919 |
Target: 5'- gCGAUGAAGACGgaUGAGcGGGGcgaugaAUGGCc -3' miRNA: 3'- -GCUGCUUCUGCgaGUUC-CUCC------UGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 130883 | 0.67 | 0.936919 |
Target: 5'- gGGCGgcGGCGgUgGAGGcGG-CGGCc -3' miRNA: 3'- gCUGCuuCUGCgAgUUCCuCCuGCCG- -5' |
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29385 | 5' | -54.3 | NC_006151.1 | + | 30866 | 0.67 | 0.936919 |
Target: 5'- nCGGCGgcGGCG---GAGGAGGggggaagagGCGGCg -3' miRNA: 3'- -GCUGCuuCUGCgagUUCCUCC---------UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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