miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29385 5' -54.3 NC_006151.1 + 130883 0.67 0.936919
Target:  5'- gGGCGgcGGCGgUgGAGGcGG-CGGCc -3'
miRNA:   3'- gCUGCuuCUGCgAgUUCCuCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 29524 0.67 0.936919
Target:  5'- gCGAUGAAGACGgaUGAGcGGGGcgaugaAUGGCc -3'
miRNA:   3'- -GCUGCUUCUGCgaGUUC-CUCC------UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 111226 0.67 0.936919
Target:  5'- cCGGCG-AGGCGCcgCAgccccAGGAGGGUGuGCa -3'
miRNA:   3'- -GCUGCuUCUGCGa-GU-----UCCUCCUGC-CG- -5'
29385 5' -54.3 NC_006151.1 + 97368 0.67 0.931936
Target:  5'- gCGGCGGcGGGCGCggCGGGGGcGuCGGCc -3'
miRNA:   3'- -GCUGCU-UCUGCGa-GUUCCUcCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 4771 0.67 0.931936
Target:  5'- gGAUGAAGACGggCAcGGGcccGGccGCGGCg -3'
miRNA:   3'- gCUGCUUCUGCgaGUuCCU---CC--UGCCG- -5'
29385 5' -54.3 NC_006151.1 + 18930 0.67 0.931936
Target:  5'- uCGcCGAAGGCGUcgAAGGGGcaGGCGGUc -3'
miRNA:   3'- -GCuGCUUCUGCGagUUCCUC--CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 82385 0.67 0.931936
Target:  5'- gCGuCGAAGGCcacgaGCUCcgcgcccGAGGGCGGCc -3'
miRNA:   3'- -GCuGCUUCUG-----CGAGuuc----CUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 100425 0.67 0.931936
Target:  5'- -cGCGggGGCGCUgCGcGGcGuGAUGGCg -3'
miRNA:   3'- gcUGCuuCUGCGA-GUuCCuC-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 64216 0.67 0.931936
Target:  5'- cCGGCGuGGGCGcCUCGgcguacAGGGccGcGACGGCg -3'
miRNA:   3'- -GCUGCuUCUGC-GAGU------UCCU--C-CUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 27488 0.67 0.931936
Target:  5'- uCGGCGggGugGUgggaaCGGGGuGGGAgGGg -3'
miRNA:   3'- -GCUGCuuCugCGa----GUUCC-UCCUgCCg -5'
29385 5' -54.3 NC_006151.1 + 23010 0.67 0.930911
Target:  5'- gGGUGggGGCGCgggggugguGGAGG-CGGCg -3'
miRNA:   3'- gCUGCuuCUGCGaguu-----CCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 86464 0.67 0.927778
Target:  5'- cCGACG-AGACGCUCuuugcgcacguGGcgcucugcgugaucGGGCGGCg -3'
miRNA:   3'- -GCUGCuUCUGCGAGuu---------CCu-------------CCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 34714 0.67 0.926714
Target:  5'- -cGCG-AGugGCagGGGGAGG-CGGUg -3'
miRNA:   3'- gcUGCuUCugCGagUUCCUCCuGCCG- -5'
29385 5' -54.3 NC_006151.1 + 45315 0.67 0.926714
Target:  5'- aGGCcGGGAgGCU--GGGAGGGUGGCg -3'
miRNA:   3'- gCUGcUUCUgCGAguUCCUCCUGCCG- -5'
29385 5' -54.3 NC_006151.1 + 49620 0.67 0.926714
Target:  5'- uGGCGGugcuGCGCgaguGGGGGugGGCc -3'
miRNA:   3'- gCUGCUuc--UGCGaguuCCUCCugCCG- -5'
29385 5' -54.3 NC_006151.1 + 89168 0.67 0.926714
Target:  5'- gGGCGAggcGGGCGCg-GGGGucgGGGGCGGa -3'
miRNA:   3'- gCUGCU---UCUGCGagUUCC---UCCUGCCg -5'
29385 5' -54.3 NC_006151.1 + 29609 0.67 0.926714
Target:  5'- gCGGCGggGGCuGgUguGGGAGGAgUGGg -3'
miRNA:   3'- -GCUGCuuCUG-CgAguUCCUCCU-GCCg -5'
29385 5' -54.3 NC_006151.1 + 46100 0.67 0.926714
Target:  5'- cCGAgGAGGuGCGCcaCGAGGAGGccgaAgGGCa -3'
miRNA:   3'- -GCUgCUUC-UGCGa-GUUCCUCC----UgCCG- -5'
29385 5' -54.3 NC_006151.1 + 75208 0.67 0.926714
Target:  5'- cCGACGAGGGCG-UCGGGGcGcGcguCGGCc -3'
miRNA:   3'- -GCUGCUUCUGCgAGUUCCuC-Cu--GCCG- -5'
29385 5' -54.3 NC_006151.1 + 6423 0.67 0.926714
Target:  5'- gCGGCGGAGAag---AAGGAGGAaGGCg -3'
miRNA:   3'- -GCUGCUUCUgcgagUUCCUCCUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.