miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 11677 0.69 0.392058
Target:  5'- cGAUCCCuGCGCCcgacggGGCCGCGGgaCGg -3'
miRNA:   3'- cUUGGGGuCGCGGca----CCGGUGCCg-GC- -5'
29386 5' -63.8 NC_006151.1 + 12660 0.74 0.187109
Target:  5'- cAGCCCCcGcCGCCGcGGCCGCaGCCGc -3'
miRNA:   3'- cUUGGGGuC-GCGGCaCCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 13196 0.7 0.345078
Target:  5'- gGGGCCCgCGGCGCCGccaacucgagucuUGGCaCGCuGCCa -3'
miRNA:   3'- -CUUGGG-GUCGCGGC-------------ACCG-GUGcCGGc -5'
29386 5' -63.8 NC_006151.1 + 14012 0.7 0.331294
Target:  5'- aGGCCCCGGCcaaugggcCCGUcGGCC-CGGCCc -3'
miRNA:   3'- cUUGGGGUCGc-------GGCA-CCGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 15057 0.71 0.303614
Target:  5'- gGGGCCCCGGCGCCuucugCGCGGCCc -3'
miRNA:   3'- -CUUGGGGUCGCGGcaccgGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 16912 0.7 0.313781
Target:  5'- -cGCCCCGGCGCCGgcgcacgucgccccgGGUCACgaucugggcaugcagGGCCu -3'
miRNA:   3'- cuUGGGGUCGCGGCa--------------CCGGUG---------------CCGGc -5'
29386 5' -63.8 NC_006151.1 + 17054 0.67 0.467613
Target:  5'- aGGGCgUCGGCGuCCGUcagcccgGGCCGCcGCCGg -3'
miRNA:   3'- -CUUGgGGUCGC-GGCA-------CCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 17117 0.66 0.514136
Target:  5'- gGGGCUCCGGCGgCGgugcugcgGGagGCGGCCa -3'
miRNA:   3'- -CUUGGGGUCGCgGCa-------CCggUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 17807 0.67 0.47747
Target:  5'- cGGACCCCcccuccugGGCGCgGcggGGCgGgCGGCCa -3'
miRNA:   3'- -CUUGGGG--------UCGCGgCa--CCGgU-GCCGGc -5'
29386 5' -63.8 NC_006151.1 + 18766 0.73 0.205767
Target:  5'- gGGugCCCGGgGcCCG-GGCCGgGGCCGu -3'
miRNA:   3'- -CUugGGGUCgC-GGCaCCGGUgCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 19623 0.67 0.459627
Target:  5'- cGGCCaccaCGGCGCCGUcGCCGCGcGCg- -3'
miRNA:   3'- cUUGGg---GUCGCGGCAcCGGUGC-CGgc -5'
29386 5' -63.8 NC_006151.1 + 20162 0.75 0.165896
Target:  5'- uGGACCgCCGG-GCCGcgcccgGGUCGCGGCCGg -3'
miRNA:   3'- -CUUGG-GGUCgCGGCa-----CCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 20296 0.74 0.191629
Target:  5'- gGGGCCCCGGgcgccCGCCGUGGCguUGGCgGc -3'
miRNA:   3'- -CUUGGGGUC-----GCGGCACCGguGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 20710 0.66 0.54237
Target:  5'- cGACCCC-GCGuCCGgcggGGCCG-GGCgCGa -3'
miRNA:   3'- cUUGGGGuCGC-GGCa---CCGGUgCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 21325 0.73 0.215687
Target:  5'- aGACgCCCGGCGCgGcgggGGuCCGCGGCUGg -3'
miRNA:   3'- cUUG-GGGUCGCGgCa---CC-GGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 21456 0.72 0.247923
Target:  5'- --cCCCCGGCGgCGUGGucCCGCGucGCCGg -3'
miRNA:   3'- cuuGGGGUCGCgGCACC--GGUGC--CGGC- -5'
29386 5' -63.8 NC_006151.1 + 21536 0.73 0.226013
Target:  5'- cGGCCggggCCGGgGCCGgGGCCugGGCCu -3'
miRNA:   3'- cUUGG----GGUCgCGGCaCCGGugCCGGc -5'
29386 5' -63.8 NC_006151.1 + 23404 0.74 0.169958
Target:  5'- -cGCgCCAGCGCUgGUGGUCGCcGGCCGu -3'
miRNA:   3'- cuUGgGGUCGCGG-CACCGGUG-CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 24947 0.67 0.459627
Target:  5'- cGAACCCaGGU-CCGUGacgaugcgcGCCGCGGCCu -3'
miRNA:   3'- -CUUGGGgUCGcGGCAC---------CGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 27164 0.66 0.561475
Target:  5'- cGGCCCCgaGGCGCCGcgugucgGGgCGCcagggGGCCGc -3'
miRNA:   3'- cUUGGGG--UCGCGGCa------CCgGUG-----CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.