miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 5405 0.66 0.536679
Target:  5'- --uCCCCGGCGaggccgaguCCGUccucguccuucucggGGCCGCGGgCGa -3'
miRNA:   3'- cuuGGGGUCGC---------GGCA---------------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 5634 0.66 0.561475
Target:  5'- -cGCCgCCgGGCGCCGagaccGGCCcgGCGGCgGg -3'
miRNA:   3'- cuUGG-GG-UCGCGGCa----CCGG--UGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5682 0.72 0.253669
Target:  5'- cGGGCCCCcgccGUGCCG-GcGCUGCGGCCa -3'
miRNA:   3'- -CUUGGGGu---CGCGGCaC-CGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 5866 0.75 0.16192
Target:  5'- cGAGCgCCCGGgGCCGccgggGGCCcCGGCCu -3'
miRNA:   3'- -CUUG-GGGUCgCGGCa----CCGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 6078 0.7 0.333443
Target:  5'- cGAGCCCCGGCggggcugcugcugcuGCUG-GGCCgaaggaggacgggGCGGCCu -3'
miRNA:   3'- -CUUGGGGUCG---------------CGGCaCCGG-------------UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 6167 0.7 0.324204
Target:  5'- cGGCCUCGGCGgCGUcgucggagaagaGGCCGCccgGGCCGa -3'
miRNA:   3'- cUUGGGGUCGCgGCA------------CCGGUG---CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 6228 0.72 0.241728
Target:  5'- gGAGCCgCGGCGCCGggagcccUGGCUGCcGCCGu -3'
miRNA:   3'- -CUUGGgGUCGCGGC-------ACCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 6275 0.66 0.514136
Target:  5'- cGAugCCCucuuccucgGCCGcGGCgGCGGCCGc -3'
miRNA:   3'- -CUugGGGucg------CGGCaCCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 6937 0.72 0.259523
Target:  5'- cGGCCCCgagGGCGCCaucuUGGCCccucgACGGCCa -3'
miRNA:   3'- cUUGGGG---UCGCGGc---ACCGG-----UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 7094 0.69 0.373862
Target:  5'- cAugCCCGGC-CCGcucugcggccaucuUGGCCGCGGCgCGc -3'
miRNA:   3'- cUugGGGUCGcGGC--------------ACCGGUGCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 8235 0.66 0.560515
Target:  5'- --uUCCCGGCggggaggGCCG-GGCCGgCGcGCCGg -3'
miRNA:   3'- cuuGGGGUCG-------CGGCaCCGGU-GC-CGGC- -5'
29386 5' -63.8 NC_006151.1 + 8319 0.67 0.47747
Target:  5'- cGAGCCCCcggGGCGCgCG-GGCCucgauCGcGCCc -3'
miRNA:   3'- -CUUGGGG---UCGCG-GCaCCGGu----GC-CGGc -5'
29386 5' -63.8 NC_006151.1 + 8974 0.66 0.523484
Target:  5'- -cGCCCCgggaAGgGUCG-GGCgAUGGCCGc -3'
miRNA:   3'- cuUGGGG----UCgCGGCaCCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 9914 0.71 0.284046
Target:  5'- aAGCCCCGGCGCCucgGGCCuCGGagaUGg -3'
miRNA:   3'- cUUGGGGUCGCGGca-CCGGuGCCg--GC- -5'
29386 5' -63.8 NC_006151.1 + 10011 0.66 0.551897
Target:  5'- aGAGCggCGGCGgCGgucGCCGCGGCCa -3'
miRNA:   3'- -CUUGggGUCGCgGCac-CGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 10558 0.72 0.253669
Target:  5'- ---gCCCGGCGCCcaaUGG-CGCGGCCGg -3'
miRNA:   3'- cuugGGGUCGCGGc--ACCgGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 10867 0.69 0.384076
Target:  5'- -cGCCCCGGCcCCccGGCUugGuGCCGg -3'
miRNA:   3'- cuUGGGGUCGcGGcaCCGGugC-CGGC- -5'
29386 5' -63.8 NC_006151.1 + 10924 0.69 0.353244
Target:  5'- cGGGCCCaCGGCGCCGagggugGGCgCGCGuGuCCGu -3'
miRNA:   3'- -CUUGGG-GUCGCGGCa-----CCG-GUGC-C-GGC- -5'
29386 5' -63.8 NC_006151.1 + 11004 0.7 0.336325
Target:  5'- gGGGCCCCGGCucgcccgcccgcucGCuCGccgGGCCGgcCGGCCGg -3'
miRNA:   3'- -CUUGGGGUCG--------------CG-GCa--CCGGU--GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 11231 0.69 0.368439
Target:  5'- --cUCCCGG-GCCGcgagGGCCGCGGCgGc -3'
miRNA:   3'- cuuGGGGUCgCGGCa---CCGGUGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.