miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 633 0.69 0.360786
Target:  5'- --cCCCCGGacgugaCGCCGgcuuccgGGgCGCGGCCGg -3'
miRNA:   3'- cuuGGGGUC------GCGGCa------CCgGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 1686 0.71 0.271562
Target:  5'- cGAGCCCUc-CGCCGcGGCCGCcGCCGc -3'
miRNA:   3'- -CUUGGGGucGCGGCaCCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 2100 0.67 0.468505
Target:  5'- uGGGCCCgAGCggGCCGcgGGgC-CGGCCGu -3'
miRNA:   3'- -CUUGGGgUCG--CGGCa-CCgGuGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 2181 0.76 0.133098
Target:  5'- cGGCCCCGGCGCCcgaGGCCcccGCGGgCCGg -3'
miRNA:   3'- cUUGGGGUCGCGGca-CCGG---UGCC-GGC- -5'
29386 5' -63.8 NC_006151.1 + 2346 0.69 0.381703
Target:  5'- cGGGCUCCagcAGCGCCGcGGCgCAgaaggcgcgcaacuCGGCCGg -3'
miRNA:   3'- -CUUGGGG---UCGCGGCaCCG-GU--------------GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 2420 0.68 0.425888
Target:  5'- aGGCCCCGGCgGCCGcaggagacgaagacgGGCCGCaGCgGg -3'
miRNA:   3'- cUUGGGGUCG-CGGCa--------------CCGGUGcCGgC- -5'
29386 5' -63.8 NC_006151.1 + 2466 0.66 0.551897
Target:  5'- cGAGcCCCCAGCGgU-UGGCCGCGcgguGCCc -3'
miRNA:   3'- -CUU-GGGGUCGCgGcACCGGUGC----CGGc -5'
29386 5' -63.8 NC_006151.1 + 3266 0.67 0.485611
Target:  5'- -cGCCgCGGCGCgcggcgaUGUGcGCCaggGCGGCCGg -3'
miRNA:   3'- cuUGGgGUCGCG-------GCAC-CGG---UGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 3594 0.71 0.28981
Target:  5'- --cCCCCGGUccucuucgucgucGCgGUGGCCGUGGCCGu -3'
miRNA:   3'- cuuGGGGUCG-------------CGgCACCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 3721 0.67 0.48652
Target:  5'- -cGCUCgGGCGCUGgguccgGGCCGgCGGCgGg -3'
miRNA:   3'- cuUGGGgUCGCGGCa-----CCGGU-GCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 3882 0.67 0.468505
Target:  5'- -cGCCgCCGGCGCCGgcgcugGGaCGacgaGGCCGg -3'
miRNA:   3'- cuUGG-GGUCGCGGCa-----CCgGUg---CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 3977 0.73 0.220798
Target:  5'- cGGCCUCGGCGagccGGCCGCGGCCa -3'
miRNA:   3'- cUUGGGGUCGCggcaCCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 4305 0.66 0.54237
Target:  5'- --uCCgCCAGCucGCgG-GGCaCGCGGCCGg -3'
miRNA:   3'- cuuGG-GGUCG--CGgCaCCG-GUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 4389 0.73 0.205767
Target:  5'- --uCCCCGGCGCgGgGGuCCGCGGCgCGg -3'
miRNA:   3'- cuuGGGGUCGCGgCaCC-GGUGCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 4792 0.76 0.129847
Target:  5'- cGGCCgCGGCGCgGUagcgGGCCGCGGCCu -3'
miRNA:   3'- cUUGGgGUCGCGgCA----CCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 4856 0.78 0.09052
Target:  5'- gGAGuCCCCGGCGCCGccguagcggacgcGGCCGuCGGCCGg -3'
miRNA:   3'- -CUU-GGGGUCGCGGCa------------CCGGU-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 5022 0.75 0.16192
Target:  5'- cGGGCUCCGGgGCCGgggccggggaGGCCGCGGCgGa -3'
miRNA:   3'- -CUUGGGGUCgCGGCa---------CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5071 0.72 0.236756
Target:  5'- gGAGgCCgAGgGCCGcggGGCCGCGGCgGg -3'
miRNA:   3'- -CUUgGGgUCgCGGCa--CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5230 0.71 0.303614
Target:  5'- gGAGgCCgAGCGCCGcgcGGCgGCGGCgGg -3'
miRNA:   3'- -CUUgGGgUCGCGGCa--CCGgUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5320 0.66 0.54237
Target:  5'- gGAGCUgCugaaGCCGcGGCCGCGGCgGa -3'
miRNA:   3'- -CUUGGgGucg-CGGCaCCGGUGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.