miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 140442 0.66 0.561475
Target:  5'- cGugCCCGGCGCCu--GCCuCGGCgGg -3'
miRNA:   3'- cUugGGGUCGCGGcacCGGuGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 140192 0.66 0.561475
Target:  5'- uGGACCCCA---UCGUGGCCACcGCgGg -3'
miRNA:   3'- -CUUGGGGUcgcGGCACCGGUGcCGgC- -5'
29386 5' -63.8 NC_006151.1 + 139631 0.75 0.158031
Target:  5'- gGGGCCauCCGGCGCCGgcgcgggGGUCGCGGCgGg -3'
miRNA:   3'- -CUUGG--GGUCGCGGCa------CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 138705 0.68 0.450839
Target:  5'- uGAgCCCGGCGCUGcGcGCCGCGcGCgGg -3'
miRNA:   3'- cUUgGGGUCGCGGCaC-CGGUGC-CGgC- -5'
29386 5' -63.8 NC_006151.1 + 138167 0.67 0.468505
Target:  5'- cGAGgCCUucguGGCGgaCGUGGCCAUGGCg- -3'
miRNA:   3'- -CUUgGGG----UCGCg-GCACCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 137745 0.69 0.360786
Target:  5'- ----gCCGGCGCCGacacGGuCCGCGGCCu -3'
miRNA:   3'- cuuggGGUCGCGGCa---CC-GGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 137147 0.67 0.504856
Target:  5'- ---aCgCGGCGCCGgagaUGGCCGCGcacgaGCCGg -3'
miRNA:   3'- cuugGgGUCGCGGC----ACCGGUGC-----CGGC- -5'
29386 5' -63.8 NC_006151.1 + 136979 0.67 0.504856
Target:  5'- uGGCCgCC-GCGCCG-GGCgGCGGgCGc -3'
miRNA:   3'- cUUGG-GGuCGCGGCaCCGgUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 136632 0.69 0.367669
Target:  5'- cGGACCCCgcGGCGcCCGUGgggcgcucGCCccucggggagcgcGCGGCCGc -3'
miRNA:   3'- -CUUGGGG--UCGC-GGCAC--------CGG-------------UGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 136222 0.66 0.522546
Target:  5'- cGGCCCCgaggagaAGaCGCUGgugcUGGCCACGcGCCu -3'
miRNA:   3'- cUUGGGG-------UC-GCGGC----ACCGGUGC-CGGc -5'
29386 5' -63.8 NC_006151.1 + 135946 0.66 0.551897
Target:  5'- gGAGCCCCucgcGGCGCgGgacguccucgaGGCCauggacgagGCGGCCa -3'
miRNA:   3'- -CUUGGGG----UCGCGgCa----------CCGG---------UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 135912 0.68 0.442144
Target:  5'- cGACCCCGGCgGUCGUGcGCgCGCucuGCCGc -3'
miRNA:   3'- cUUGGGGUCG-CGGCAC-CG-GUGc--CGGC- -5'
29386 5' -63.8 NC_006151.1 + 135489 0.67 0.459627
Target:  5'- cGGGCCaggCGGCG-CGcGGCCuCGGCCGa -3'
miRNA:   3'- -CUUGGg--GUCGCgGCaCCGGuGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 135358 0.66 0.54237
Target:  5'- cGAGCCgCC-GCGCguUGGCCGCGugcGCCGc -3'
miRNA:   3'- -CUUGG-GGuCGCGgcACCGGUGC---CGGC- -5'
29386 5' -63.8 NC_006151.1 + 135169 0.66 0.523484
Target:  5'- cGGCCCggacgGGCGCCGgcuGCCGCcGCCGg -3'
miRNA:   3'- cUUGGGg----UCGCGGCac-CGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 134782 0.66 0.523484
Target:  5'- cGGCUCCAcGgGCCuGUgaGGCCGCGGCgGc -3'
miRNA:   3'- cUUGGGGU-CgCGG-CA--CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 134749 0.67 0.495649
Target:  5'- -cGCCCCgagcAGCGCgCGcggGGcCCGCGGCUu -3'
miRNA:   3'- cuUGGGG----UCGCG-GCa--CC-GGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 133459 0.66 0.551897
Target:  5'- uGGCCCCGGUcgagGCCcgcgaggcGGCCGCGGgCGu -3'
miRNA:   3'- cUUGGGGUCG----CGGca------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 133237 0.66 0.561475
Target:  5'- -cGCgCCAGgGCaCGuUGGCCucgcACGGCCu -3'
miRNA:   3'- cuUGgGGUCgCG-GC-ACCGG----UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 132760 0.68 0.425043
Target:  5'- -cGCCCagCAGCGCCG-GGCCcucgucgaaGGCCa -3'
miRNA:   3'- cuUGGG--GUCGCGGCaCCGGug-------CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.