miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 125456 1.07 0.000804
Target:  5'- uGAACCCCAGCGCCGUGGCCACGGCCGc -3'
miRNA:   3'- -CUUGGGGUCGCGGCACCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 37750 0.83 0.043307
Target:  5'- uGGGCCCUgccgcacgcggugAGCGCCGUGGCCAUGaGCCGc -3'
miRNA:   3'- -CUUGGGG-------------UCGCGGCACCGGUGC-CGGC- -5'
29386 5' -63.8 NC_006151.1 + 38264 0.82 0.048168
Target:  5'- -cGCCCCGGCcaaCGUGGCCGCGGCCc -3'
miRNA:   3'- cuUGGGGUCGcg-GCACCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 50337 0.81 0.054817
Target:  5'- ---gCCCGGCGCC-UGGCCGCGGCCu -3'
miRNA:   3'- cuugGGGUCGCGGcACCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 89712 0.8 0.065643
Target:  5'- gGAACCCggCGGCGCC--GGCCGCGGCCGc -3'
miRNA:   3'- -CUUGGG--GUCGCGGcaCCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 4856 0.78 0.09052
Target:  5'- gGAGuCCCCGGCGCCGccguagcggacgcGGCCGuCGGCCGg -3'
miRNA:   3'- -CUU-GGGGUCGCGGCa------------CCGGU-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 96204 0.77 0.106369
Target:  5'- gGGGCgCCGcGuCGCCGUGGCgGCGGCCGc -3'
miRNA:   3'- -CUUGgGGU-C-GCGGCACCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 113592 0.77 0.111835
Target:  5'- cGACCCCcuguGCGCCGUGGCCGaGcGCCa -3'
miRNA:   3'- cUUGGGGu---CGCGGCACCGGUgC-CGGc -5'
29386 5' -63.8 NC_006151.1 + 90088 0.77 0.117563
Target:  5'- aGGGCCCCcgccGCGCCGcaGGCCGCGGCg- -3'
miRNA:   3'- -CUUGGGGu---CGCGGCa-CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 78158 0.77 0.117563
Target:  5'- -cGCCUCGGcCGCCGUGGUCGaGGCCGu -3'
miRNA:   3'- cuUGGGGUC-GCGGCACCGGUgCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 112725 0.76 0.123563
Target:  5'- aGGCCCUGGCcugccccCCGUGcGCCACGGCCGu -3'
miRNA:   3'- cUUGGGGUCGc------GGCAC-CGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 76883 0.76 0.123563
Target:  5'- gGAGCCCCAGCGCCGccuGCUGC-GCCGg -3'
miRNA:   3'- -CUUGGGGUCGCGGCac-CGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 36319 0.76 0.123563
Target:  5'- cGGGCCCCGGUcccggGCCGgcuccgGGCCcCGGCCGc -3'
miRNA:   3'- -CUUGGGGUCG-----CGGCa-----CCGGuGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 4792 0.76 0.129847
Target:  5'- cGGCCgCGGCGCgGUagcgGGCCGCGGCCu -3'
miRNA:   3'- cUUGGgGUCGCGgCA----CCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 50263 0.76 0.133098
Target:  5'- uGAGCaCCUucggacgcGCGuCCGUGGCCACGGUCGa -3'
miRNA:   3'- -CUUG-GGGu-------CGC-GGCACCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 2181 0.76 0.133098
Target:  5'- cGGCCCCGGCGCCcgaGGCCcccGCGGgCCGg -3'
miRNA:   3'- cUUGGGGUCGCGGca-CCGG---UGCC-GGC- -5'
29386 5' -63.8 NC_006151.1 + 78414 0.76 0.136424
Target:  5'- cGGGCCgCgAGCGCCGUGGCCcAC-GCCGu -3'
miRNA:   3'- -CUUGG-GgUCGCGGCACCGG-UGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 70626 0.76 0.139827
Target:  5'- aGAUCCUcggcGGCGCCGUGGCCGCGcGCg- -3'
miRNA:   3'- cUUGGGG----UCGCGGCACCGGUGC-CGgc -5'
29386 5' -63.8 NC_006151.1 + 130348 0.76 0.143307
Target:  5'- -cGCCgCGGCGUCGUGGUUgACGGCCGc -3'
miRNA:   3'- cuUGGgGUCGCGGCACCGG-UGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 99132 0.75 0.146866
Target:  5'- uGGACCCCGGgGCgcaggccgugcaCGUGGCCGCcGCCGc -3'
miRNA:   3'- -CUUGGGGUCgCG------------GCACCGGUGcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.