miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 99132 0.75 0.146866
Target:  5'- uGGACCCCGGgGCgcaggccgugcaCGUGGCCGCcGCCGc -3'
miRNA:   3'- -CUUGGGGUCgCG------------GCACCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 103805 0.75 0.150505
Target:  5'- aGGCCgcgcugUCGGCgGCCGUGGCgGCGGCCGu -3'
miRNA:   3'- cUUGG------GGUCG-CGGCACCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 38376 0.75 0.154227
Target:  5'- --gUCCCAGCGCCGgcgccGGCgGCGGCgGg -3'
miRNA:   3'- cuuGGGGUCGCGGCa----CCGgUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 139631 0.75 0.158031
Target:  5'- gGGGCCauCCGGCGCCGgcgcgggGGUCGCGGCgGg -3'
miRNA:   3'- -CUUGG--GGUCGCGGCa------CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5022 0.75 0.16192
Target:  5'- cGGGCUCCGGgGCCGgggccggggaGGCCGCGGCgGa -3'
miRNA:   3'- -CUUGGGGUCgCGGCa---------CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5866 0.75 0.16192
Target:  5'- cGAGCgCCCGGgGCCGccgggGGCCcCGGCCu -3'
miRNA:   3'- -CUUG-GGGUCgCGGCa----CCGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 39959 0.75 0.165896
Target:  5'- uGACCCCgGGCGCCGUcgccGCCGCGGgCGc -3'
miRNA:   3'- cUUGGGG-UCGCGGCAc---CGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 79107 0.75 0.165896
Target:  5'- -cGCCCCucCGUCGUggcugGGCCACGGCCGc -3'
miRNA:   3'- cuUGGGGucGCGGCA-----CCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 20162 0.75 0.165896
Target:  5'- uGGACCgCCGG-GCCGcgcccgGGUCGCGGCCGg -3'
miRNA:   3'- -CUUGG-GGUCgCGGCa-----CCGGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 23404 0.74 0.169958
Target:  5'- -cGCgCCAGCGCUgGUGGUCGCcGGCCGu -3'
miRNA:   3'- cuUGgGGUCGCGG-CACCGGUG-CCGGC- -5'
29386 5' -63.8 NC_006151.1 + 86814 0.74 0.174109
Target:  5'- --uCCCCGGCGCCc-GGCCcaguGCGGCCa -3'
miRNA:   3'- cuuGGGGUCGCGGcaCCGG----UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 125190 0.74 0.178351
Target:  5'- cGGCCucgCCGGCGUCGUGGgccCCGCGGCCc -3'
miRNA:   3'- cUUGG---GGUCGCGGCACC---GGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 64367 0.74 0.182683
Target:  5'- --cCCCCAGCGCaCGgucgaGGCCGUGGCCa -3'
miRNA:   3'- cuuGGGGUCGCG-GCa----CCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 12660 0.74 0.187109
Target:  5'- cAGCCCCcGcCGCCGcGGCCGCaGCCGc -3'
miRNA:   3'- cUUGGGGuC-GCGGCaCCGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 20296 0.74 0.191629
Target:  5'- gGGGCCCCGGgcgccCGCCGUGGCguUGGCgGc -3'
miRNA:   3'- -CUUGGGGUC-----GCGGCACCGguGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 50431 0.74 0.191629
Target:  5'- -cGCCCCugcGCGCCGgcGGCCugGGCa- -3'
miRNA:   3'- cuUGGGGu--CGCGGCa-CCGGugCCGgc -5'
29386 5' -63.8 NC_006151.1 + 94668 0.74 0.191629
Target:  5'- gGGugCCCGGCGggcagcuccCCGaaGGCCGCGGCCa -3'
miRNA:   3'- -CUugGGGUCGC---------GGCa-CCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 101452 0.74 0.191629
Target:  5'- ----gUCGGCGCCGUgGGCCugGGCCu -3'
miRNA:   3'- cuuggGGUCGCGGCA-CCGGugCCGGc -5'
29386 5' -63.8 NC_006151.1 + 132326 0.73 0.196244
Target:  5'- aGAGCUCgC-GCGCCGUGGCCACGuaCa -3'
miRNA:   3'- -CUUGGG-GuCGCGGCACCGGUGCcgGc -5'
29386 5' -63.8 NC_006151.1 + 36106 0.73 0.196244
Target:  5'- cGAGgCCgAGgcCGCCGUccucgcGGCCGCGGCCGg -3'
miRNA:   3'- -CUUgGGgUC--GCGGCA------CCGGUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.