miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 88465 0.66 0.551897
Target:  5'- -cGCCCgAGC-UCGUcGGCCACGGUg- -3'
miRNA:   3'- cuUGGGgUCGcGGCA-CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 98059 0.66 0.551897
Target:  5'- cAGCCCCgGGCGCUc-GGCCugGGgCu -3'
miRNA:   3'- cUUGGGG-UCGCGGcaCCGGugCCgGc -5'
29386 5' -63.8 NC_006151.1 + 135946 0.66 0.551897
Target:  5'- gGAGCCCCucgcGGCGCgGgacguccucgaGGCCauggacgagGCGGCCa -3'
miRNA:   3'- -CUUGGGG----UCGCGgCa----------CCGG---------UGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 72263 0.66 0.54237
Target:  5'- cGACgCCgAGCGgCGUGGCCagcaugcgguGCGGCg- -3'
miRNA:   3'- cUUG-GGgUCGCgGCACCGG----------UGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 20710 0.66 0.54237
Target:  5'- cGACCCC-GCGuCCGgcggGGCCG-GGCgCGa -3'
miRNA:   3'- cUUGGGGuCGC-GGCa---CCGGUgCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 4305 0.66 0.54237
Target:  5'- --uCCgCCAGCucGCgG-GGCaCGCGGCCGg -3'
miRNA:   3'- cuuGG-GGUCG--CGgCaCCG-GUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 116394 0.66 0.54237
Target:  5'- ---gCCgAGCGCCuccucGGCCACGGCg- -3'
miRNA:   3'- cuugGGgUCGCGGca---CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 78091 0.66 0.54237
Target:  5'- aGAugCUCuGCGaccuCGUGGCCGgGGCgGa -3'
miRNA:   3'- -CUugGGGuCGCg---GCACCGGUgCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 5320 0.66 0.54237
Target:  5'- gGAGCUgCugaaGCCGcGGCCGCGGCgGa -3'
miRNA:   3'- -CUUGGgGucg-CGGCaCCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 75113 0.66 0.54237
Target:  5'- cGGGCgCCAGCaGCUGgucggcGGCCGgCGGCgCGg -3'
miRNA:   3'- -CUUGgGGUCG-CGGCa-----CCGGU-GCCG-GC- -5'
29386 5' -63.8 NC_006151.1 + 75818 0.66 0.54237
Target:  5'- gGAGCCgCUGGCGCaCGccGGCCGUGGUCa -3'
miRNA:   3'- -CUUGG-GGUCGCG-GCa-CCGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 95886 0.66 0.54237
Target:  5'- cGAgUCCAGCGCCuUGaG-CACGGCCa -3'
miRNA:   3'- cUUgGGGUCGCGGcAC-CgGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 90922 0.66 0.54237
Target:  5'- cAGCCCguGCGCCGUcucgaGcGUCAUGGCg- -3'
miRNA:   3'- cUUGGGguCGCGGCA-----C-CGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 60308 0.66 0.54237
Target:  5'- cAugUCCGG-GCCGUGcGCCAuCGGCUu -3'
miRNA:   3'- cUugGGGUCgCGGCAC-CGGU-GCCGGc -5'
29386 5' -63.8 NC_006151.1 + 135358 0.66 0.54237
Target:  5'- cGAGCCgCC-GCGCguUGGCCGCGugcGCCGc -3'
miRNA:   3'- -CUUGG-GGuCGCGgcACCGGUGC---CGGC- -5'
29386 5' -63.8 NC_006151.1 + 131866 0.66 0.54237
Target:  5'- -cGCgCCGGCGgCGUcgggucgcagGGCagCACGGCCGa -3'
miRNA:   3'- cuUGgGGUCGCgGCA----------CCG--GUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 106695 0.66 0.54237
Target:  5'- cGGGCgCCGGCGaccuguacgcgcCCGUGGgCACGGgCa -3'
miRNA:   3'- -CUUGgGGUCGC------------GGCACCgGUGCCgGc -5'
29386 5' -63.8 NC_006151.1 + 100825 0.66 0.54237
Target:  5'- cGGGCCCCGaCGCCGUG-CCGCucucGGCg- -3'
miRNA:   3'- -CUUGGGGUcGCGGCACcGGUG----CCGgc -5'
29386 5' -63.8 NC_006151.1 + 66890 0.66 0.54142
Target:  5'- cGGCCCC-GCGCCGgaggacGCCGCcgaggagGGCCa -3'
miRNA:   3'- cUUGGGGuCGCGGCac----CGGUG-------CCGGc -5'
29386 5' -63.8 NC_006151.1 + 38684 0.66 0.54142
Target:  5'- gGGGCCCCGGCGCaagcGCCGCucccucggacucgGGCCc -3'
miRNA:   3'- -CUUGGGGUCGCGgcacCGGUG-------------CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.