miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29386 5' -63.8 NC_006151.1 + 75203 0.66 0.54142
Target:  5'- uGAGCCCgAcgagggcgucgggGCGCgCGUcGGCCACGuaggcGCCGa -3'
miRNA:   3'- -CUUGGGgU-------------CGCG-GCA-CCGGUGC-----CGGC- -5'
29386 5' -63.8 NC_006151.1 + 5405 0.66 0.536679
Target:  5'- --uCCCCGGCGaggccgaguCCGUccucguccuucucggGGCCGCGGgCGa -3'
miRNA:   3'- cuuGGGGUCGC---------GGCA---------------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 30562 0.66 0.532897
Target:  5'- -cGCCgCAcGCGCCGUc-CCGCGGCCc -3'
miRNA:   3'- cuUGGgGU-CGCGGCAccGGUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 40453 0.66 0.532897
Target:  5'- --uCCCCGGCGCCu--GCCucccCGGCCc -3'
miRNA:   3'- cuuGGGGUCGCGGcacCGGu---GCCGGc -5'
29386 5' -63.8 NC_006151.1 + 66044 0.66 0.532897
Target:  5'- uGAACCgCCGGUGCCuGUccaGGaCCccgcggACGGCCGc -3'
miRNA:   3'- -CUUGG-GGUCGCGG-CA---CC-GG------UGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 90716 0.66 0.532897
Target:  5'- -cGCCCCgcaggcggcGGCGaCgGUGGCgGCGGCg- -3'
miRNA:   3'- cuUGGGG---------UCGC-GgCACCGgUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 108672 0.66 0.532897
Target:  5'- --cCCUCAGCaGCCG-GaGCgGCGGCCc -3'
miRNA:   3'- cuuGGGGUCG-CGGCaC-CGgUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 46624 0.66 0.532897
Target:  5'- ---aCCCGGUGCC-UGcGaCGCGGCCGg -3'
miRNA:   3'- cuugGGGUCGCGGcAC-CgGUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 131744 0.66 0.527242
Target:  5'- cGGGCCCgGGCGaggcgaCCGUcgcggucgcgaccgcGGCCGCGGgCGc -3'
miRNA:   3'- -CUUGGGgUCGC------GGCA---------------CCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 34010 0.66 0.523484
Target:  5'- --gUCCCGGCGCgccGGCC-CGGCCc -3'
miRNA:   3'- cuuGGGGUCGCGgcaCCGGuGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 50636 0.66 0.523484
Target:  5'- -cGCCUCGGCGac--GGCCGCGGgCGg -3'
miRNA:   3'- cuUGGGGUCGCggcaCCGGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 62034 0.66 0.523484
Target:  5'- cAGCCCCccgcuGCGCCGcgUGGCggugcacgCGCGcGCCGu -3'
miRNA:   3'- cUUGGGGu----CGCGGC--ACCG--------GUGC-CGGC- -5'
29386 5' -63.8 NC_006151.1 + 71086 0.66 0.523484
Target:  5'- -cACCaCGGCGCCGcGGgCGCGGgCGc -3'
miRNA:   3'- cuUGGgGUCGCGGCaCCgGUGCCgGC- -5'
29386 5' -63.8 NC_006151.1 + 82668 0.66 0.523484
Target:  5'- -cACCCUgcggcGCGCCGcgggcgagGGCgGCGGCCc -3'
miRNA:   3'- cuUGGGGu----CGCGGCa-------CCGgUGCCGGc -5'
29386 5' -63.8 NC_006151.1 + 82974 0.66 0.523484
Target:  5'- -cACCuCCAugccgcgcgucuGCGCCGccacGGCCGCGGCg- -3'
miRNA:   3'- cuUGG-GGU------------CGCGGCa---CCGGUGCCGgc -5'
29386 5' -63.8 NC_006151.1 + 134782 0.66 0.523484
Target:  5'- cGGCUCCAcGgGCCuGUgaGGCCGCGGCgGc -3'
miRNA:   3'- cUUGGGGU-CgCGG-CA--CCGGUGCCGgC- -5'
29386 5' -63.8 NC_006151.1 + 8974 0.66 0.523484
Target:  5'- -cGCCCCgggaAGgGUCG-GGCgAUGGCCGc -3'
miRNA:   3'- cuUGGGG----UCgCGGCaCCGgUGCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 109115 0.66 0.523484
Target:  5'- cGAGCCgCCGGC-CCGcGcCCGcCGGCCGg -3'
miRNA:   3'- -CUUGG-GGUCGcGGCaCcGGU-GCCGGC- -5'
29386 5' -63.8 NC_006151.1 + 135169 0.66 0.523484
Target:  5'- cGGCCCggacgGGCGCCGgcuGCCGCcGCCGg -3'
miRNA:   3'- cUUGGGg----UCGCGGCac-CGGUGcCGGC- -5'
29386 5' -63.8 NC_006151.1 + 136222 0.66 0.522546
Target:  5'- cGGCCCCgaggagaAGaCGCUGgugcUGGCCACGcGCCu -3'
miRNA:   3'- cUUGGGG-------UC-GCGGC----ACCGGUGC-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.