miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 3' -53.2 NC_006151.1 + 125327 1.1 0.003987
Target:  5'- aGUUUGCGCGCCUGCAGUUCACCUACGa -3'
miRNA:   3'- -CAAACGCGCGGACGUCAAGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 105658 0.83 0.205045
Target:  5'- ---cGCuGCGCCUGCAGUUCuacgcgGCCUACGg -3'
miRNA:   3'- caaaCG-CGCGGACGUCAAG------UGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 98928 0.76 0.505202
Target:  5'- ---cGCuGCGCgaGCAGUUCGCCgagGCGg -3'
miRNA:   3'- caaaCG-CGCGgaCGUCAAGUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 127803 0.72 0.717571
Target:  5'- ---cGCGCGCgggggcgcgagguccUUGCGGUUCACgUACGu -3'
miRNA:   3'- caaaCGCGCG---------------GACGUCAAGUGgAUGC- -5'
29387 3' -53.2 NC_006151.1 + 52757 0.71 0.753919
Target:  5'- ---cGCGCGCCUcGCAGcgcagCGCCgcgGCGu -3'
miRNA:   3'- caaaCGCGCGGA-CGUCaa---GUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 130140 0.71 0.763773
Target:  5'- ---cGCGCGCCaGCAGguaCACCUcugccACGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCaa-GUGGA-----UGC- -5'
29387 3' -53.2 NC_006151.1 + 94045 0.71 0.792546
Target:  5'- ---cGCGCGCC-GCGGcgUCGCC-GCGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCa-AGUGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 98388 0.7 0.810973
Target:  5'- --cUGCGCcugGCCUGCcg--CGCCUACGu -3'
miRNA:   3'- caaACGCG---CGGACGucaaGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 97599 0.7 0.819931
Target:  5'- ---aGCGCGCaCgcggGCAcGUgCACCUGCGa -3'
miRNA:   3'- caaaCGCGCG-Ga---CGU-CAaGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 139955 0.7 0.828708
Target:  5'- aGUUcG-GCGCCgaGCAGUUCACCccggACGg -3'
miRNA:   3'- -CAAaCgCGCGGa-CGUCAAGUGGa---UGC- -5'
29387 3' -53.2 NC_006151.1 + 50436 0.7 0.828708
Target:  5'- --cUGCGCGCCgGCGGccugggCACCgcccGCGg -3'
miRNA:   3'- caaACGCGCGGaCGUCaa----GUGGa---UGC- -5'
29387 3' -53.2 NC_006151.1 + 105737 0.7 0.836444
Target:  5'- ---cGCGCGCCUgaagcagcgcgugGCGGcgCGCCUggGCGa -3'
miRNA:   3'- caaaCGCGCGGA-------------CGUCaaGUGGA--UGC- -5'
29387 3' -53.2 NC_006151.1 + 92055 0.7 0.840674
Target:  5'- --cUGCuGCGCCUGCugcgcaugcugcacaAGcgCACCUACu -3'
miRNA:   3'- caaACG-CGCGGACG---------------UCaaGUGGAUGc -5'
29387 3' -53.2 NC_006151.1 + 47562 0.69 0.845681
Target:  5'- ---cGCGCGauaCUGCAGUUUACUgcagccGCGg -3'
miRNA:   3'- caaaCGCGCg--GACGUCAAGUGGa-----UGC- -5'
29387 3' -53.2 NC_006151.1 + 64471 0.69 0.861828
Target:  5'- ---cGCGCGCCgccgcgGCGGggaCGCCcGCGg -3'
miRNA:   3'- caaaCGCGCGGa-----CGUCaa-GUGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 119404 0.69 0.861828
Target:  5'- ---gGCGCGCgUGCuGUUCuACCUggaGCGc -3'
miRNA:   3'- caaaCGCGCGgACGuCAAG-UGGA---UGC- -5'
29387 3' -53.2 NC_006151.1 + 57990 0.69 0.861828
Target:  5'- ---aGCGCGCC-GCGGacCGCCUcCGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCaaGUGGAuGC- -5'
29387 3' -53.2 NC_006151.1 + 140303 0.69 0.868809
Target:  5'- ---gGCGcCGCCUGCGGgacgugcgcugcaUcgUCACCUACa -3'
miRNA:   3'- caaaCGC-GCGGACGUC-------------A--AGUGGAUGc -5'
29387 3' -53.2 NC_006151.1 + 112810 0.69 0.877091
Target:  5'- ---cGCGCGUcgCUGCAGcgCGCCUuCGc -3'
miRNA:   3'- caaaCGCGCG--GACGUCaaGUGGAuGC- -5'
29387 3' -53.2 NC_006151.1 + 118372 0.68 0.884376
Target:  5'- ---cGCGCGCCcGCuucgGGUUCucgGCCUACc -3'
miRNA:   3'- caaaCGCGCGGaCG----UCAAG---UGGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.