miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 3' -53.2 NC_006151.1 + 20776 0.67 0.928495
Target:  5'- ---cGCGCGCCgggcgaGCGGcucgCGCUUGCGc -3'
miRNA:   3'- caaaCGCGCGGa-----CGUCaa--GUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 21276 0.65 0.966192
Target:  5'- ---aGCGCGCCcaucGCGGUgcccgugccgacgaUCACCgaGCGg -3'
miRNA:   3'- caaaCGCGCGGa---CGUCA--------------AGUGGa-UGC- -5'
29387 3' -53.2 NC_006151.1 + 26977 0.66 0.963833
Target:  5'- ---aGCGCGCUgcgcaGCGGggCGCuCUGCu -3'
miRNA:   3'- caaaCGCGCGGa----CGUCaaGUG-GAUGc -5'
29387 3' -53.2 NC_006151.1 + 31776 0.66 0.960268
Target:  5'- ---cGCGCGCCggGCGGcucuccuccUUCACCgcCGc -3'
miRNA:   3'- caaaCGCGCGGa-CGUC---------AAGUGGauGC- -5'
29387 3' -53.2 NC_006151.1 + 47562 0.69 0.845681
Target:  5'- ---cGCGCGauaCUGCAGUUUACUgcagccGCGg -3'
miRNA:   3'- caaaCGCGCg--GACGUCAAGUGGa-----UGC- -5'
29387 3' -53.2 NC_006151.1 + 49173 0.68 0.904783
Target:  5'- ---gGCGCGCC-GCGGggugCugCUGCu -3'
miRNA:   3'- caaaCGCGCGGaCGUCaa--GugGAUGc -5'
29387 3' -53.2 NC_006151.1 + 50436 0.7 0.828708
Target:  5'- --cUGCGCGCCgGCGGccugggCACCgcccGCGg -3'
miRNA:   3'- caaACGCGCGGaCGUCaa----GUGGa---UGC- -5'
29387 3' -53.2 NC_006151.1 + 52757 0.71 0.753919
Target:  5'- ---cGCGCGCCUcGCAGcgcagCGCCgcgGCGu -3'
miRNA:   3'- caaaCGCGCGGA-CGUCaa---GUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 52963 0.66 0.960268
Target:  5'- ---gGUGCGCgUGCAGgcggcUCAUgUACGc -3'
miRNA:   3'- caaaCGCGCGgACGUCa----AGUGgAUGC- -5'
29387 3' -53.2 NC_006151.1 + 55420 0.67 0.933786
Target:  5'- --cUGCGCGCCgcGCAGgcgggCGCggACGg -3'
miRNA:   3'- caaACGCGCGGa-CGUCaa---GUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 55541 0.67 0.922948
Target:  5'- ---cGCGCGCCauggGCGacgaCGCCUACGu -3'
miRNA:   3'- caaaCGCGCGGa---CGUcaa-GUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 57115 0.68 0.917146
Target:  5'- ---cGCGCGCCgccgcgcccgGCGGUcgCcCCUGCGc -3'
miRNA:   3'- caaaCGCGCGGa---------CGUCAa-GuGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 57990 0.69 0.861828
Target:  5'- ---aGCGCGCC-GCGGacCGCCUcCGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCaaGUGGAuGC- -5'
29387 3' -53.2 NC_006151.1 + 60128 0.68 0.891422
Target:  5'- --cUGCGCGCacacgaGGUucgUCACCUGCGa -3'
miRNA:   3'- caaACGCGCGgacg--UCA---AGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 62387 0.68 0.891422
Target:  5'- ---cGCGCGCCguccugGCGGUccugucgcugaUCGCCcugGCGa -3'
miRNA:   3'- caaaCGCGCGGa-----CGUCA-----------AGUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 62436 0.67 0.928495
Target:  5'- ---cGUGCGCCUGguccgCGCCUGCa -3'
miRNA:   3'- caaaCGCGCGGACgucaaGUGGAUGc -5'
29387 3' -53.2 NC_006151.1 + 64297 0.66 0.952427
Target:  5'- cGUUgucggGCGUGCC-GCAGcgCGCCgUGCu -3'
miRNA:   3'- -CAAa----CGCGCGGaCGUCaaGUGG-AUGc -5'
29387 3' -53.2 NC_006151.1 + 64471 0.69 0.861828
Target:  5'- ---cGCGCGCCgccgcgGCGGggaCGCCcGCGg -3'
miRNA:   3'- caaaCGCGCGGa-----CGUCaa-GUGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 66095 0.66 0.952427
Target:  5'- ---cGCGgGCCUGCAGcgCGC--GCGc -3'
miRNA:   3'- caaaCGCgCGGACGUCaaGUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 76891 0.66 0.960268
Target:  5'- ---aGCGcCGCCUGCug--CGCCgGCGa -3'
miRNA:   3'- caaaCGC-GCGGACGucaaGUGGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.