miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 3' -53.2 NC_006151.1 + 78237 0.66 0.948142
Target:  5'- ---gGCGCGCa-GCGGUUCGCgCUGu- -3'
miRNA:   3'- caaaCGCGCGgaCGUCAAGUG-GAUgc -5'
29387 3' -53.2 NC_006151.1 + 81901 0.67 0.922948
Target:  5'- ---gGCGCGCCggucGCGGcgCGCCgccuCGg -3'
miRNA:   3'- caaaCGCGCGGa---CGUCaaGUGGau--GC- -5'
29387 3' -53.2 NC_006151.1 + 83501 0.68 0.917146
Target:  5'- ---aGCGCGCCaGCGGgaagcaCACCgucGCGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCaa----GUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 85362 0.68 0.917146
Target:  5'- ---gGCGCGCCUGCGcGUggUCcCCgGCGc -3'
miRNA:   3'- caaaCGCGCGGACGU-CA--AGuGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 85800 0.67 0.922948
Target:  5'- ---cGCGCGCgUGCAGcgcCACCaGCu -3'
miRNA:   3'- caaaCGCGCGgACGUCaa-GUGGaUGc -5'
29387 3' -53.2 NC_006151.1 + 92055 0.7 0.840674
Target:  5'- --cUGCuGCGCCUGCugcgcaugcugcacaAGcgCACCUACu -3'
miRNA:   3'- caaACG-CGCGGACG---------------UCaaGUGGAUGc -5'
29387 3' -53.2 NC_006151.1 + 92701 0.66 0.963833
Target:  5'- ---cGCGCGCCgagcGCgAGUUCAuCCaGCa -3'
miRNA:   3'- caaaCGCGCGGa---CG-UCAAGU-GGaUGc -5'
29387 3' -53.2 NC_006151.1 + 94045 0.71 0.792546
Target:  5'- ---cGCGCGCC-GCGGcgUCGCC-GCGg -3'
miRNA:   3'- caaaCGCGCGGaCGUCa-AGUGGaUGC- -5'
29387 3' -53.2 NC_006151.1 + 95914 0.67 0.938824
Target:  5'- --aUGcCGCGCgUGCAG-UCGCCcgaggGCGu -3'
miRNA:   3'- caaAC-GCGCGgACGUCaAGUGGa----UGC- -5'
29387 3' -53.2 NC_006151.1 + 96106 0.66 0.960268
Target:  5'- ---aGCGgGgUUGCGGgcacgaUCGCCUGCGu -3'
miRNA:   3'- caaaCGCgCgGACGUCa-----AGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 97599 0.7 0.819931
Target:  5'- ---aGCGCGCaCgcggGCAcGUgCACCUGCGa -3'
miRNA:   3'- caaaCGCGCG-Ga---CGU-CAaGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 98388 0.7 0.810973
Target:  5'- --cUGCGCcugGCCUGCcg--CGCCUACGu -3'
miRNA:   3'- caaACGCG---CGGACGucaaGUGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 98928 0.76 0.505202
Target:  5'- ---cGCuGCGCgaGCAGUUCGCCgagGCGg -3'
miRNA:   3'- caaaCG-CGCGgaCGUCAAGUGGa--UGC- -5'
29387 3' -53.2 NC_006151.1 + 100414 0.68 0.904783
Target:  5'- --aUGCGCGCCgacGCGGgggCGCUgcgcgGCGu -3'
miRNA:   3'- caaACGCGCGGa--CGUCaa-GUGGa----UGC- -5'
29387 3' -53.2 NC_006151.1 + 100573 0.66 0.963487
Target:  5'- ---gGC-CGCCUGCAGgcCGCCaccguccUGCGg -3'
miRNA:   3'- caaaCGcGCGGACGUCaaGUGG-------AUGC- -5'
29387 3' -53.2 NC_006151.1 + 105658 0.83 0.205045
Target:  5'- ---cGCuGCGCCUGCAGUUCuacgcgGCCUACGg -3'
miRNA:   3'- caaaCG-CGCGGACGUCAAG------UGGAUGC- -5'
29387 3' -53.2 NC_006151.1 + 105737 0.7 0.836444
Target:  5'- ---cGCGCGCCUgaagcagcgcgugGCGGcgCGCCUggGCGa -3'
miRNA:   3'- caaaCGCGCGGA-------------CGUCaaGUGGA--UGC- -5'
29387 3' -53.2 NC_006151.1 + 110201 0.66 0.956468
Target:  5'- ---cGCGcCGCCUGCGGgagaCGCggACGa -3'
miRNA:   3'- caaaCGC-GCGGACGUCaa--GUGgaUGC- -5'
29387 3' -53.2 NC_006151.1 + 112810 0.69 0.877091
Target:  5'- ---cGCGCGUcgCUGCAGcgCGCCUuCGc -3'
miRNA:   3'- caaaCGCGCG--GACGUCaaGUGGAuGC- -5'
29387 3' -53.2 NC_006151.1 + 118372 0.68 0.884376
Target:  5'- ---cGCGCGCCcGCuucgGGUUCucgGCCUACc -3'
miRNA:   3'- caaaCGCGCGGaCG----UCAAG---UGGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.