Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 85800 | 0.67 | 0.922948 |
Target: 5'- ---cGCGCGCgUGCAGcgcCACCaGCu -3' miRNA: 3'- caaaCGCGCGgACGUCaa-GUGGaUGc -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 57115 | 0.68 | 0.917146 |
Target: 5'- ---cGCGCGCCgccgcgcccgGCGGUcgCcCCUGCGc -3' miRNA: 3'- caaaCGCGCGGa---------CGUCAa-GuGGAUGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 85362 | 0.68 | 0.917146 |
Target: 5'- ---gGCGCGCCUGCGcGUggUCcCCgGCGc -3' miRNA: 3'- caaaCGCGCGGACGU-CA--AGuGGaUGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 83501 | 0.68 | 0.917146 |
Target: 5'- ---aGCGCGCCaGCGGgaagcaCACCgucGCGg -3' miRNA: 3'- caaaCGCGCGGaCGUCaa----GUGGa--UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 49173 | 0.68 | 0.904783 |
Target: 5'- ---gGCGCGCC-GCGGggugCugCUGCu -3' miRNA: 3'- caaaCGCGCGGaCGUCaa--GugGAUGc -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 100414 | 0.68 | 0.904783 |
Target: 5'- --aUGCGCGCCgacGCGGgggCGCUgcgcgGCGu -3' miRNA: 3'- caaACGCGCGGa--CGUCaa-GUGGa----UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 132437 | 0.68 | 0.895534 |
Target: 5'- ---gGCGCGCCUGCGcGUgcagguagcgcagCACCgcGCGg -3' miRNA: 3'- caaaCGCGCGGACGU-CAa------------GUGGa-UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 60128 | 0.68 | 0.891422 |
Target: 5'- --cUGCGCGCacacgaGGUucgUCACCUGCGa -3' miRNA: 3'- caaACGCGCGgacg--UCA---AGUGGAUGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 62387 | 0.68 | 0.891422 |
Target: 5'- ---cGCGCGCCguccugGCGGUccugucgcugaUCGCCcugGCGa -3' miRNA: 3'- caaaCGCGCGGa-----CGUCA-----------AGUGGa--UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 118372 | 0.68 | 0.884376 |
Target: 5'- ---cGCGCGCCcGCuucgGGUUCucgGCCUACc -3' miRNA: 3'- caaaCGCGCGGaCG----UCAAG---UGGAUGc -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 112810 | 0.69 | 0.877091 |
Target: 5'- ---cGCGCGUcgCUGCAGcgCGCCUuCGc -3' miRNA: 3'- caaaCGCGCG--GACGUCaaGUGGAuGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 140303 | 0.69 | 0.868809 |
Target: 5'- ---gGCGcCGCCUGCGGgacgugcgcugcaUcgUCACCUACa -3' miRNA: 3'- caaaCGC-GCGGACGUC-------------A--AGUGGAUGc -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 64471 | 0.69 | 0.861828 |
Target: 5'- ---cGCGCGCCgccgcgGCGGggaCGCCcGCGg -3' miRNA: 3'- caaaCGCGCGGa-----CGUCaa-GUGGaUGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 119404 | 0.69 | 0.861828 |
Target: 5'- ---gGCGCGCgUGCuGUUCuACCUggaGCGc -3' miRNA: 3'- caaaCGCGCGgACGuCAAG-UGGA---UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 57990 | 0.69 | 0.861828 |
Target: 5'- ---aGCGCGCC-GCGGacCGCCUcCGg -3' miRNA: 3'- caaaCGCGCGGaCGUCaaGUGGAuGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 47562 | 0.69 | 0.845681 |
Target: 5'- ---cGCGCGauaCUGCAGUUUACUgcagccGCGg -3' miRNA: 3'- caaaCGCGCg--GACGUCAAGUGGa-----UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 92055 | 0.7 | 0.840674 |
Target: 5'- --cUGCuGCGCCUGCugcgcaugcugcacaAGcgCACCUACu -3' miRNA: 3'- caaACG-CGCGGACG---------------UCaaGUGGAUGc -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 105737 | 0.7 | 0.836444 |
Target: 5'- ---cGCGCGCCUgaagcagcgcgugGCGGcgCGCCUggGCGa -3' miRNA: 3'- caaaCGCGCGGA-------------CGUCaaGUGGA--UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 50436 | 0.7 | 0.828708 |
Target: 5'- --cUGCGCGCCgGCGGccugggCACCgcccGCGg -3' miRNA: 3'- caaACGCGCGGaCGUCaa----GUGGa---UGC- -5' |
|||||||
29387 | 3' | -53.2 | NC_006151.1 | + | 139955 | 0.7 | 0.828708 |
Target: 5'- aGUUcG-GCGCCgaGCAGUUCACCccggACGg -3' miRNA: 3'- -CAAaCgCGCGGa-CGUCAAGUGGa---UGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home