miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 27223 0.68 0.81913
Target:  5'- cGCGCGcCGUGGACGcGCAccuccucggggucggGCggGGGCCc -3'
miRNA:   3'- cCGCGU-GCACUUGC-UGUa--------------CGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 28169 0.66 0.919311
Target:  5'- cGGCGU-CGUugGGGCGGCGagugccgucgGCcGGGCCg -3'
miRNA:   3'- -CCGCGuGCA--CUUGCUGUa---------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 28380 0.69 0.808686
Target:  5'- gGGgGCACGUGGGgccCGugGagagauuUGaUUGGGCCa -3'
miRNA:   3'- -CCgCGUGCACUU---GCugU-------AC-GACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 28659 0.75 0.456248
Target:  5'- aGGgGCACGUGGggcaaACGGCGggaucUGaUUGGGCCa -3'
miRNA:   3'- -CCgCGUGCACU-----UGCUGU-----AC-GACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 28813 0.66 0.930132
Target:  5'- gGGCGUcCGgGAcCGGCcaAUGC-GGGCCc -3'
miRNA:   3'- -CCGCGuGCaCUuGCUG--UACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 28939 0.67 0.881189
Target:  5'- uGgGCACGUGGGCccgagggccgGAUcUGaUUGGGCCa -3'
miRNA:   3'- cCgCGUGCACUUG----------CUGuAC-GACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 30813 0.67 0.881189
Target:  5'- gGGgGCACGcGGGCGGgAggaguUGCgUGGGCg -3'
miRNA:   3'- -CCgCGUGCaCUUGCUgU-----ACG-ACCCGg -5'
29387 5' -55.6 NC_006151.1 + 31652 0.71 0.685004
Target:  5'- gGGCGCGCGgggagggaGGAgGGCGgaggaaggGCcGGGCCg -3'
miRNA:   3'- -CCGCGUGCa-------CUUgCUGUa-------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 31713 0.66 0.919311
Target:  5'- gGGCGC-CGggcgGAACGggGCGUGgaGaGGCg -3'
miRNA:   3'- -CCGCGuGCa---CUUGC--UGUACgaC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 33308 0.69 0.782524
Target:  5'- cGCGCGCGUGGgaccgggaccGgGACAggggGCggGGGCg -3'
miRNA:   3'- cCGCGUGCACU----------UgCUGUa---CGa-CCCGg -5'
29387 5' -55.6 NC_006151.1 + 34625 0.71 0.664684
Target:  5'- aGGCGCGgGUgGGGCGACc-GCggGGGUCg -3'
miRNA:   3'- -CCGCGUgCA-CUUGCUGuaCGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 36363 0.67 0.859096
Target:  5'- cGGCaGCACucgcAGCGGCAgagGCcgGGGCCc -3'
miRNA:   3'- -CCG-CGUGcac-UUGCUGUa--CGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 40050 0.73 0.571868
Target:  5'- gGGCGC-CGUGGAgacccacCGGCccGCggGGGCCu -3'
miRNA:   3'- -CCGCGuGCACUU-------GCUGuaCGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 46361 0.66 0.930132
Target:  5'- cGGCGCA-GUGGauGCGGCGgaUGCaGaGGCg -3'
miRNA:   3'- -CCGCGUgCACU--UGCUGU--ACGaC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 46577 0.68 0.851314
Target:  5'- cGCGCAgGgcccgacGGGCGGcCGUGCUGaGGCg -3'
miRNA:   3'- cCGCGUgCa------CUUGCU-GUACGAC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 48116 0.68 0.826803
Target:  5'- cGGUGCugGUGuuuuuuuCGGCGgcGCUGGGg- -3'
miRNA:   3'- -CCGCGugCACuu-----GCUGUa-CGACCCgg -5'
29387 5' -55.6 NC_006151.1 + 48238 0.72 0.634029
Target:  5'- cGGCGCGaggagcUGgaaugGGACGAUGaagaccacccgcUGCUGGGCCu -3'
miRNA:   3'- -CCGCGU------GCa----CUUGCUGU------------ACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 51160 0.7 0.734879
Target:  5'- cGGUaCGCgGUGAuggUGACGUGCaGGGCCc -3'
miRNA:   3'- -CCGcGUG-CACUu--GCUGUACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 51771 0.69 0.788037
Target:  5'- uGGCGCGCGUGAagcacACGGCcacccgcuccagGCUcaGGCCc -3'
miRNA:   3'- -CCGCGUGCACU-----UGCUGua----------CGAc-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 52805 0.66 0.919311
Target:  5'- aGuaGUugGUGAuGCGGCcgGCguuGGCCg -3'
miRNA:   3'- -CcgCGugCACU-UGCUGuaCGac-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.