miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 18231 0.66 0.913542
Target:  5'- aGGCgGCugGcGGucACGcCAUaGUUGGGCCc -3'
miRNA:   3'- -CCG-CGugCaCU--UGCuGUA-CGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 18829 0.66 0.913542
Target:  5'- uGGCGacgaGCGUGuagucccagguGGCGACGUgGCcguugUGGGUCa -3'
miRNA:   3'- -CCGCg---UGCAC-----------UUGCUGUA-CG-----ACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 19072 0.73 0.593168
Target:  5'- gGGCGCGCGcgGGugGuAgAUGCaGGGCUc -3'
miRNA:   3'- -CCGCGUGCa-CUugC-UgUACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 19256 0.66 0.913542
Target:  5'- --aGCGCGUGGAagcggggcucgUGGCGcGCgGGGCCc -3'
miRNA:   3'- ccgCGUGCACUU-----------GCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 19434 0.69 0.782524
Target:  5'- gGGUG-ACGaUGGGCGGCucgcGCUGGaGCCg -3'
miRNA:   3'- -CCGCgUGC-ACUUGCUGua--CGACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 19644 0.7 0.754269
Target:  5'- cGCGCGCGUcGAGgGugAaGUUGGcGCCc -3'
miRNA:   3'- cCGCGUGCA-CUUgCugUaCGACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 20141 0.71 0.674861
Target:  5'- gGGCGcCGCGgGGGCGGCGcguggaccGCcGGGCCg -3'
miRNA:   3'- -CCGC-GUGCaCUUGCUGUa-------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 20699 0.66 0.913542
Target:  5'- cGCaGCACGUacGAccccGCGuCcgGCgGGGCCg -3'
miRNA:   3'- cCG-CGUGCA--CU----UGCuGuaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 21332 0.73 0.572878
Target:  5'- cGGCGCggcggggguccGCGgcugGAACGGCuccgcggGCUGcGGCCa -3'
miRNA:   3'- -CCGCG-----------UGCa---CUUGCUGua-----CGAC-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 21598 0.67 0.894821
Target:  5'- uGGCGUACGgcguGGCGGCG-GCguaGGCCc -3'
miRNA:   3'- -CCGCGUGCac--UUGCUGUaCGac-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 22083 0.74 0.503501
Target:  5'- gGGCGCgguACGUGGGCcGCcgG-UGGGCCa -3'
miRNA:   3'- -CCGCG---UGCACUUGcUGuaCgACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22184 0.73 0.562794
Target:  5'- gGGCGCGUGUGGuaGACGUccGCgGGGCCg -3'
miRNA:   3'- -CCGCGUGCACUugCUGUA--CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22760 0.76 0.411485
Target:  5'- aGCGgAUGUG-GCGGCucuucUGCUGGGCCu -3'
miRNA:   3'- cCGCgUGCACuUGCUGu----ACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22790 0.66 0.913542
Target:  5'- cGCGCACGU---------GCUGGGCCg -3'
miRNA:   3'- cCGCGUGCAcuugcuguaCGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 23677 0.68 0.851314
Target:  5'- cGGUGCACGUcucgacGGAgGGCAUgGCguccccgGGGCa -3'
miRNA:   3'- -CCGCGUGCA------CUUgCUGUA-CGa------CCCGg -5'
29387 5' -55.6 NC_006151.1 + 23872 0.7 0.725046
Target:  5'- uGGCGUugGcggGGGCGAgCGgguucacggGCUGGGCg -3'
miRNA:   3'- -CCGCGugCa--CUUGCU-GUa--------CGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 25120 0.68 0.83516
Target:  5'- aGCGCuggGCGUGGacgcGCGACAacccccUGCUGaGCCc -3'
miRNA:   3'- cCGCG---UGCACU----UGCUGU------ACGACcCGG- -5'
29387 5' -55.6 NC_006151.1 + 26333 0.68 0.843333
Target:  5'- gGGCGaggcccgccuCACG-GGGCGGCG-GC-GGGCCg -3'
miRNA:   3'- -CCGC----------GUGCaCUUGCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 27098 0.66 0.930132
Target:  5'- gGGCGCGCGUGucgccCGuCAcGUcgGcGGCCg -3'
miRNA:   3'- -CCGCGUGCACuu---GCuGUaCGa-C-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 27172 0.68 0.818269
Target:  5'- aGGCGcCGCGUGu-CGGgGcGCcaggGGGCCg -3'
miRNA:   3'- -CCGC-GUGCACuuGCUgUaCGa---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.