miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 2289 0.66 0.913542
Target:  5'- gGGCGCccGCGgcGGCGACG-GCgcccgGGGUCa -3'
miRNA:   3'- -CCGCG--UGCacUUGCUGUaCGa----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 2373 0.67 0.874039
Target:  5'- aGGCGCGCaacucGGcCGGCAgGCccucgGGGCCg -3'
miRNA:   3'- -CCGCGUGca---CUuGCUGUaCGa----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 2601 0.69 0.767591
Target:  5'- aGGCGCGCG---GCGGCA-GCgggaccgggguccgGGGCCc -3'
miRNA:   3'- -CCGCGUGCacuUGCUGUaCGa-------------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 2811 0.66 0.930132
Target:  5'- cGGCGCAC-UGGGCGGCcgGgUccaGGCg -3'
miRNA:   3'- -CCGCGUGcACUUGCUGuaCgAc--CCGg -5'
29387 5' -55.6 NC_006151.1 + 2841 0.66 0.919311
Target:  5'- cGCGgACGUaGACGugGUagucccccacgGCcGGGCCg -3'
miRNA:   3'- cCGCgUGCAcUUGCugUA-----------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 3053 0.7 0.754269
Target:  5'- aGGCGUGCGaGucCGGCGUGCagaggcggUGGGCg -3'
miRNA:   3'- -CCGCGUGCaCuuGCUGUACG--------ACCCGg -5'
29387 5' -55.6 NC_006151.1 + 3271 0.74 0.522996
Target:  5'- cGGCGCGCG---GCGAUGUGCgccaGGGCg -3'
miRNA:   3'- -CCGCGUGCacuUGCUGUACGa---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 3726 0.67 0.888118
Target:  5'- gGGCGCugGguccgGGccgGCGGCGggggaGCUGGcguaGCCg -3'
miRNA:   3'- -CCGCGugCa----CU---UGCUGUa----CGACC----CGG- -5'
29387 5' -55.6 NC_006151.1 + 3888 0.77 0.353611
Target:  5'- cGGCGCcgGCGcugGGACGACGaggccgggcUGCUcGGGCCa -3'
miRNA:   3'- -CCGCG--UGCa--CUUGCUGU---------ACGA-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 4980 0.69 0.763807
Target:  5'- aGGUGguUGUugugGAGCGGCGcuuccUGCgcggGGGCCg -3'
miRNA:   3'- -CCGCguGCA----CUUGCUGU-----ACGa---CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 5124 0.66 0.924841
Target:  5'- cGGCGCGgGcGAGUGGgGcGCcGGGCCg -3'
miRNA:   3'- -CCGCGUgCaCUUGCUgUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 8003 0.66 0.913542
Target:  5'- gGGCGgGCGggaggGGGCgcgaGACcgGCUcGGCCu -3'
miRNA:   3'- -CCGCgUGCa----CUUG----CUGuaCGAcCCGG- -5'
29387 5' -55.6 NC_006151.1 + 10945 0.7 0.745593
Target:  5'- gGGCGCGCGUGuccgugugagaguuuACGGUGUGgUGGGUg -3'
miRNA:   3'- -CCGCGUGCACu--------------UGCUGUACgACCCGg -5'
29387 5' -55.6 NC_006151.1 + 11789 0.71 0.685004
Target:  5'- aGgGCGCGUGGGCGAgAgggGCgGGGUg -3'
miRNA:   3'- cCgCGUGCACUUGCUgUa--CGaCCCGg -5'
29387 5' -55.6 NC_006151.1 + 15036 0.78 0.323218
Target:  5'- aGGUGCGCGUccACGGCGcGCgGGGCCc -3'
miRNA:   3'- -CCGCGUGCAcuUGCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 16923 0.77 0.360721
Target:  5'- cGGCGCACGUcgccccgggucacGAucugGGCAUGCaGGGCCu -3'
miRNA:   3'- -CCGCGUGCA-------------CUug--CUGUACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 17093 0.66 0.926986
Target:  5'- aGGCGCGCGcccgucgGGgcgccgggggcuccgGCGGCGgUGCUGcgggaggcGGCCa -3'
miRNA:   3'- -CCGCGUGCa------CU---------------UGCUGU-ACGAC--------CCGG- -5'
29387 5' -55.6 NC_006151.1 + 17400 0.81 0.215966
Target:  5'- cGGgGCGCGUGGcgcGCGGCA-GCaGGGCCa -3'
miRNA:   3'- -CCgCGUGCACU---UGCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 18051 0.68 0.843333
Target:  5'- gGGCGCAgCGggGAGCGGgGUcCcuuggGGGCCa -3'
miRNA:   3'- -CCGCGU-GCa-CUUGCUgUAcGa----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 18127 0.67 0.888118
Target:  5'- gGGCGCugGggucGAACGugucCAUGUcggcggGGGCg -3'
miRNA:   3'- -CCGCGugCa---CUUGCu---GUACGa-----CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.