miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 125363 1.15 0.001302
Target:  5'- aGGCGCACGUGAACGACAUGCUGGGCCg -3'
miRNA:   3'- -CCGCGUGCACUUGCUGUACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 128812 0.84 0.133613
Target:  5'- cGGCGCGCGUGGccccguacGCGGCGcuCUGGGCCu -3'
miRNA:   3'- -CCGCGUGCACU--------UGCUGUacGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 116204 0.83 0.151957
Target:  5'- uGGCGCGCGcGAGCGugAUGUUGGcgaGCCg -3'
miRNA:   3'- -CCGCGUGCaCUUGCugUACGACC---CGG- -5'
29387 5' -55.6 NC_006151.1 + 17400 0.81 0.215966
Target:  5'- cGGgGCGCGUGGcgcGCGGCA-GCaGGGCCa -3'
miRNA:   3'- -CCgCGUGCACU---UGCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 79091 0.81 0.226804
Target:  5'- cGCGCGCGcGAGCGAgcgccccuccguCGUgGCUGGGCCa -3'
miRNA:   3'- cCGCGUGCaCUUGCU------------GUA-CGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 103392 0.79 0.268396
Target:  5'- uGCGCGCGcugcUGGGCGACuuugccacGCUGGGCCc -3'
miRNA:   3'- cCGCGUGC----ACUUGCUGua------CGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 104568 0.78 0.308768
Target:  5'- gGGCGCGCGgcgcGCgGACGUGCUGcaGGCCg -3'
miRNA:   3'- -CCGCGUGCacu-UG-CUGUACGAC--CCGG- -5'
29387 5' -55.6 NC_006151.1 + 120110 0.78 0.308768
Target:  5'- uGCGCcgccGCGUGGugGACAUGCUcaacggGGGCUu -3'
miRNA:   3'- cCGCG----UGCACUugCUGUACGA------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 120251 0.78 0.323218
Target:  5'- uGGCGCGCGUGAGCuucGAgGUGCUGcGGg- -3'
miRNA:   3'- -CCGCGUGCACUUG---CUgUACGAC-CCgg -5'
29387 5' -55.6 NC_006151.1 + 15036 0.78 0.323218
Target:  5'- aGGUGCGCGUccACGGCGcGCgGGGCCc -3'
miRNA:   3'- -CCGCGUGCAcuUGCUGUaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 54911 0.78 0.338166
Target:  5'- cGGCGCagcGCGUGcacGGCGAgGUGCUGGcguGCCa -3'
miRNA:   3'- -CCGCG---UGCAC---UUGCUgUACGACC---CGG- -5'
29387 5' -55.6 NC_006151.1 + 57590 0.77 0.345826
Target:  5'- aGGCGCACGUGAccaGGCcgGCcucGGCCg -3'
miRNA:   3'- -CCGCGUGCACUug-CUGuaCGac-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 3888 0.77 0.353611
Target:  5'- cGGCGCcgGCGcugGGACGACGaggccgggcUGCUcGGGCCa -3'
miRNA:   3'- -CCGCG--UGCa--CUUGCUGU---------ACGA-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 16923 0.77 0.360721
Target:  5'- cGGCGCACGUcgccccgggucacGAucugGGCAUGCaGGGCCu -3'
miRNA:   3'- -CCGCGUGCA-------------CUug--CUGUACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 73693 0.77 0.361518
Target:  5'- cGGCGCGgcucuGCGccGCGUGCUGGGCCa -3'
miRNA:   3'- -CCGCGUgcacuUGC--UGUACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 100463 0.77 0.361518
Target:  5'- aGGCGCuGCGcGAguGCGAgGcGCUGGGCCu -3'
miRNA:   3'- -CCGCG-UGCaCU--UGCUgUaCGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 84661 0.77 0.367125
Target:  5'- gGGCGCGCGccucgaggccgaggUGGACGAgCA-GCUGcGGCCg -3'
miRNA:   3'- -CCGCGUGC--------------ACUUGCU-GUaCGAC-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 138102 0.77 0.369547
Target:  5'- cGGCGCACGccgcUGGcgGACAUGCUGcgcGGCCu -3'
miRNA:   3'- -CCGCGUGC----ACUugCUGUACGAC---CCGG- -5'
29387 5' -55.6 NC_006151.1 + 54683 0.76 0.385968
Target:  5'- gGGCaccuGCGCGUcgccGGCaGCGUGCUGGGCCa -3'
miRNA:   3'- -CCG----CGUGCAc---UUGcUGUACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 114416 0.76 0.402864
Target:  5'- cGGUGCACGUGcaccACcGCGUGCUGGaCCg -3'
miRNA:   3'- -CCGCGUGCACu---UGcUGUACGACCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.