miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 22760 0.76 0.411485
Target:  5'- aGCGgAUGUG-GCGGCucuucUGCUGGGCCu -3'
miRNA:   3'- cCGCgUGCACuUGCUGu----ACGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 73764 0.76 0.411485
Target:  5'- uGGgGCACGcaGGGC-ACGUGCUGGGCg -3'
miRNA:   3'- -CCgCGUGCa-CUUGcUGUACGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 98952 0.76 0.42022
Target:  5'- cGGCGCGggcCGUGGACGAgGcggcGCUGGuGCCc -3'
miRNA:   3'- -CCGCGU---GCACUUGCUgUa---CGACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 136999 0.76 0.42022
Target:  5'- gGGCGCGCGcGcACGGC--GCUGGGCg -3'
miRNA:   3'- -CCGCGUGCaCuUGCUGuaCGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 99102 0.76 0.429067
Target:  5'- uGCGCACG-GAccAgGGCGUGCUGGcGCUg -3'
miRNA:   3'- cCGCGUGCaCU--UgCUGUACGACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 78051 0.75 0.447083
Target:  5'- cGGCGCAUcUGGGCGACGcGCggcgGGaGCCu -3'
miRNA:   3'- -CCGCGUGcACUUGCUGUaCGa---CC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 28659 0.75 0.456248
Target:  5'- aGGgGCACGUGGggcaaACGGCGggaucUGaUUGGGCCa -3'
miRNA:   3'- -CCgCGUGCACU-----UGCUGU-----AC-GACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 140069 0.75 0.465512
Target:  5'- cGGCGCGCGUGcuccGCGAgaugGUGCUccugaacgaGGGCCu -3'
miRNA:   3'- -CCGCGUGCACu---UGCUg---UACGA---------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 103230 0.75 0.484329
Target:  5'- uGCGCGCGaUGGAgGACcUGCUGcGGCa -3'
miRNA:   3'- cCGCGUGC-ACUUgCUGuACGAC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 119458 0.75 0.484329
Target:  5'- cGGCG-ACGUGGACGcCGUGCgcuacGuGGCCg -3'
miRNA:   3'- -CCGCgUGCACUUGCuGUACGa----C-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 102100 0.74 0.493873
Target:  5'- aGGaGCACGUGGuCG-CGUGCgcGGGCCg -3'
miRNA:   3'- -CCgCGUGCACUuGCuGUACGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22083 0.74 0.503501
Target:  5'- gGGCGCgguACGUGGGCcGCcgG-UGGGCCa -3'
miRNA:   3'- -CCGCG---UGCACUUGcUGuaCgACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 102406 0.74 0.513211
Target:  5'- cGGCGCGCGUcgcgcggcccgcGAACGAggcCAUGCaccGGGCg -3'
miRNA:   3'- -CCGCGUGCA------------CUUGCU---GUACGa--CCCGg -5'
29387 5' -55.6 NC_006151.1 + 3271 0.74 0.522996
Target:  5'- cGGCGCGCG---GCGAUGUGCgccaGGGCg -3'
miRNA:   3'- -CCGCGUGCacuUGCUGUACGa---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 75157 0.74 0.532853
Target:  5'- gGGCGCACGg--GCauCAUGCcGGGCCa -3'
miRNA:   3'- -CCGCGUGCacuUGcuGUACGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 85897 0.73 0.542775
Target:  5'- cGGCGCACGacgccgUGGccgugcaguACGAgGagggGCUGGGCCu -3'
miRNA:   3'- -CCGCGUGC------ACU---------UGCUgUa---CGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 96878 0.73 0.542775
Target:  5'- cGGCGCGCGcgggggcaUGAugGgAUGUGuCUGGGCg -3'
miRNA:   3'- -CCGCGUGC--------ACUugC-UGUAC-GACCCGg -5'
29387 5' -55.6 NC_006151.1 + 90026 0.73 0.542775
Target:  5'- uGGCGCACGUG-ACGGCcaGCcccaGGGCg -3'
miRNA:   3'- -CCGCGUGCACuUGCUGuaCGa---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 120393 0.73 0.552757
Target:  5'- cGUGgACGUGcucAACGGCccGCUGGGCUu -3'
miRNA:   3'- cCGCgUGCAC---UUGCUGuaCGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 58486 0.73 0.562794
Target:  5'- cGGCGUccACGUGGAUGAUgcccGCgcgcGGGCCg -3'
miRNA:   3'- -CCGCG--UGCACUUGCUGua--CGa---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.