miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 28169 0.66 0.919311
Target:  5'- cGGCGU-CGUugGGGCGGCGagugccgucgGCcGGGCCg -3'
miRNA:   3'- -CCGCGuGCA--CUUGCUGUa---------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 2841 0.66 0.919311
Target:  5'- cGCGgACGUaGACGugGUagucccccacgGCcGGGCCg -3'
miRNA:   3'- cCGCgUGCAcUUGCugUA-----------CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 99507 0.66 0.919311
Target:  5'- uGGaGCACGUGGuGCGcCAcUGCaUGGcGCCg -3'
miRNA:   3'- -CCgCGUGCACU-UGCuGU-ACG-ACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 52805 0.66 0.919311
Target:  5'- aGuaGUugGUGAuGCGGCcgGCguuGGCCg -3'
miRNA:   3'- -CcgCGugCACU-UGCUGuaCGac-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 70823 0.66 0.919311
Target:  5'- cGGCGCAgcUGGAU--CGUGCUcGGCCu -3'
miRNA:   3'- -CCGCGUgcACUUGcuGUACGAcCCGG- -5'
29387 5' -55.6 NC_006151.1 + 96609 0.66 0.919311
Target:  5'- gGGCGCGCc--GACGuCGUGCccgaGGGCg -3'
miRNA:   3'- -CCGCGUGcacUUGCuGUACGa---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 100067 0.66 0.919311
Target:  5'- uGCGCGCGgccgcCGAgGUGCUcgaGGcGCCg -3'
miRNA:   3'- cCGCGUGCacuu-GCUgUACGA---CC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 119964 0.66 0.919311
Target:  5'- gGGCGCGCuGUGcccGGCGACGaGCUuccuGGCg -3'
miRNA:   3'- -CCGCGUG-CAC---UUGCUGUaCGAc---CCGg -5'
29387 5' -55.6 NC_006151.1 + 122211 0.66 0.919311
Target:  5'- cGGCGCAgcCGUGcGCGGUGUGCUucgaGGaGCUg -3'
miRNA:   3'- -CCGCGU--GCACuUGCUGUACGA----CC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 122561 0.66 0.919311
Target:  5'- cGGCGCcuguacgcCGUGAGCGagcuGCAguuuugGCUGGcGUCc -3'
miRNA:   3'- -CCGCGu-------GCACUUGC----UGUa-----CGACC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 54812 0.66 0.919311
Target:  5'- cGGCGCGUGcUGGcgcGCGACGcGCUcacGGGCg -3'
miRNA:   3'- -CCGCGUGC-ACU---UGCUGUaCGA---CCCGg -5'
29387 5' -55.6 NC_006151.1 + 130862 0.66 0.919311
Target:  5'- cGGCGCgggcgggaccGCaGUGGGCGGCGgcgguggagGCgGcGGCCg -3'
miRNA:   3'- -CCGCG----------UG-CACUUGCUGUa--------CGaC-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 103817 0.66 0.918744
Target:  5'- cGGCgGC-CGUGGcgGCGGCcguggagAUGCUcGGGCg -3'
miRNA:   3'- -CCG-CGuGCACU--UGCUG-------UACGA-CCCGg -5'
29387 5' -55.6 NC_006151.1 + 60766 0.66 0.917605
Target:  5'- aGGCGguCGUGGcguagucgcucaccACcACGUGCacgcUGGGCUc -3'
miRNA:   3'- -CCGCguGCACU--------------UGcUGUACG----ACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 86747 0.66 0.915878
Target:  5'- cGGCGUGCGcgGAcacaccuaccugcagGCGACgAUGUgggcgGGGCUu -3'
miRNA:   3'- -CCGCGUGCa-CU---------------UGCUG-UACGa----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22790 0.66 0.913542
Target:  5'- cGCGCACGU---------GCUGGGCCg -3'
miRNA:   3'- cCGCGUGCAcuugcuguaCGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 105144 0.66 0.913542
Target:  5'- -aCGCGCGUcGACGGCc-GC-GGGCCc -3'
miRNA:   3'- ccGCGUGCAcUUGCUGuaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 117793 0.66 0.913542
Target:  5'- gGGCGcCACGcc--CGGCGggGCgGGGCCc -3'
miRNA:   3'- -CCGC-GUGCacuuGCUGUa-CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 74133 0.66 0.913542
Target:  5'- uGCGCGgGUGcAGCGG-GUGCcggGGGUCg -3'
miRNA:   3'- cCGCGUgCAC-UUGCUgUACGa--CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 65202 0.66 0.913542
Target:  5'- aGCGCGC-UGcGCGAguUGa-GGGCCa -3'
miRNA:   3'- cCGCGUGcACuUGCUguACgaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.