miRNA display CGI


Results 41 - 60 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 18829 0.66 0.913542
Target:  5'- uGGCGacgaGCGUGuagucccagguGGCGACGUgGCcguugUGGGUCa -3'
miRNA:   3'- -CCGCg---UGCAC-----------UUGCUGUA-CG-----ACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 22790 0.66 0.913542
Target:  5'- cGCGCACGU---------GCUGGGCCg -3'
miRNA:   3'- cCGCGUGCAcuugcuguaCGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 65202 0.66 0.913542
Target:  5'- aGCGCGC-UGcGCGAguUGa-GGGCCa -3'
miRNA:   3'- cCGCGUGcACuUGCUguACgaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 74133 0.66 0.913542
Target:  5'- uGCGCGgGUGcAGCGG-GUGCcggGGGUCg -3'
miRNA:   3'- cCGCGUgCAC-UUGCUgUACGa--CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 117793 0.66 0.913542
Target:  5'- gGGCGcCACGcc--CGGCGggGCgGGGCCc -3'
miRNA:   3'- -CCGC-GUGCacuuGCUGUa-CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 105144 0.66 0.913542
Target:  5'- -aCGCGCGUcGACGGCc-GC-GGGCCc -3'
miRNA:   3'- ccGCGUGCAcUUGCUGuaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 20699 0.66 0.913542
Target:  5'- cGCaGCACGUacGAccccGCGuCcgGCgGGGCCg -3'
miRNA:   3'- cCG-CGUGCA--CU----UGCuGuaCGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 92536 0.66 0.911765
Target:  5'- gGGCGCcggACGUGGACucggugcaGCAgguggccgagucgcUGgaGGGCCg -3'
miRNA:   3'- -CCGCG---UGCACUUGc-------UGU--------------ACgaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 105451 0.66 0.911168
Target:  5'- cGGCGCGCGccggggcccUGGGCGACuucuuccgcgacGCcGGuGCCg -3'
miRNA:   3'- -CCGCGUGC---------ACUUGCUGua----------CGaCC-CGG- -5'
29387 5' -55.6 NC_006151.1 + 55266 0.66 0.907536
Target:  5'- -cCGCAccucCGUGGucaacagcaucaACGGCAUGCUcgaGGGCUa -3'
miRNA:   3'- ccGCGU----GCACU------------UGCUGUACGA---CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 58396 0.66 0.907536
Target:  5'- cGGCGCAgcCGgccauGGCGcGCA-GCUGGGCg -3'
miRNA:   3'- -CCGCGU--GCac---UUGC-UGUaCGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 75094 0.66 0.907536
Target:  5'- aGGCGCAgGU---CGGCGUuGCcGGGCg -3'
miRNA:   3'- -CCGCGUgCAcuuGCUGUA-CGaCCCGg -5'
29387 5' -55.6 NC_006151.1 + 85145 0.66 0.907536
Target:  5'- uGGUGCACcgcguGCGGCAgg--GGGCCg -3'
miRNA:   3'- -CCGCGUGcacu-UGCUGUacgaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 127834 0.66 0.907536
Target:  5'- -aCGUACGUG-GCGGCGUcgcgGCUGcGCCg -3'
miRNA:   3'- ccGCGUGCACuUGCUGUA----CGACcCGG- -5'
29387 5' -55.6 NC_006151.1 + 85170 0.66 0.907536
Target:  5'- cGGCGC-CGcGGGCGcCGccgccccGCUGGGCa -3'
miRNA:   3'- -CCGCGuGCaCUUGCuGUa------CGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 99905 0.66 0.907536
Target:  5'- aGGUGCugACGUGGgcgcGCGACuacgGCgccGGCCu -3'
miRNA:   3'- -CCGCG--UGCACU----UGCUGua--CGac-CCGG- -5'
29387 5' -55.6 NC_006151.1 + 100904 0.66 0.907536
Target:  5'- cGGCGCGCGcGcgcccGACGACGcgaGCgcGGGCg -3'
miRNA:   3'- -CCGCGUGCaC-----UUGCUGUa--CGa-CCCGg -5'
29387 5' -55.6 NC_006151.1 + 106772 0.66 0.90382
Target:  5'- -aCGCGCGUGAGCGccuggACcuggccgcggcggcgGUGCUcgucgGGGCCc -3'
miRNA:   3'- ccGCGUGCACUUGC-----UG---------------UACGA-----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 92174 0.66 0.901295
Target:  5'- cGUGCGCGccGACGGCGacg-GGGCCg -3'
miRNA:   3'- cCGCGUGCacUUGCUGUacgaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 77041 0.66 0.901295
Target:  5'- aGGCaGCACGcgggccgGAGCG-CGaGCgccaGGGCCa -3'
miRNA:   3'- -CCG-CGUGCa------CUUGCuGUaCGa---CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.