miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29387 5' -55.6 NC_006151.1 + 141529 0.69 0.791684
Target:  5'- aGGCGacggACGUGAGCGAgcUGCUGcGCg -3'
miRNA:   3'- -CCGCg---UGCACUUGCUguACGACcCGg -5'
29387 5' -55.6 NC_006151.1 + 141426 0.67 0.873313
Target:  5'- gGGCGCggcccgGCGcGAACGACGUccccguaGgaGGGCg -3'
miRNA:   3'- -CCGCG------UGCaCUUGCUGUA-------CgaCCCGg -5'
29387 5' -55.6 NC_006151.1 + 140069 0.75 0.465512
Target:  5'- cGGCGCGCGUGcuccGCGAgaugGUGCUccugaacgaGGGCCu -3'
miRNA:   3'- -CCGCGUGCACu---UGCUg---UACGA---------CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 139987 0.7 0.734879
Target:  5'- cGGCGCgucACGUGGgagACGcuCAUGUuccacgGGGCCg -3'
miRNA:   3'- -CCGCG---UGCACU---UGCu-GUACGa-----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 138828 0.69 0.763807
Target:  5'- cGCGCGCcagGAGCGgcGCAUGUUuGGCCc -3'
miRNA:   3'- cCGCGUGca-CUUGC--UGUACGAcCCGG- -5'
29387 5' -55.6 NC_006151.1 + 138178 0.71 0.664684
Target:  5'- uGGCGgACGUGGccAUGGCGcccgUGCUGcGGCa -3'
miRNA:   3'- -CCGCgUGCACU--UGCUGU----ACGAC-CCGg -5'
29387 5' -55.6 NC_006151.1 + 138102 0.77 0.369547
Target:  5'- cGGCGCACGccgcUGGcgGACAUGCUGcgcGGCCu -3'
miRNA:   3'- -CCGCGUGC----ACUugCUGUACGAC---CCGG- -5'
29387 5' -55.6 NC_006151.1 + 138004 0.69 0.809565
Target:  5'- cGGCGCACGccgucACGcGCGUGCUGcacaGCCu -3'
miRNA:   3'- -CCGCGUGCacu--UGC-UGUACGACc---CGG- -5'
29387 5' -55.6 NC_006151.1 + 137770 0.69 0.763807
Target:  5'- uGGCGCGCGUGcuccAGCaGGCcgugcUGCUGGaGCg -3'
miRNA:   3'- -CCGCGUGCAC----UUG-CUGu----ACGACC-CGg -5'
29387 5' -55.6 NC_006151.1 + 137514 0.71 0.664684
Target:  5'- uGGCGcCGCGccGGGCGACGagGaCUGGGCg -3'
miRNA:   3'- -CCGC-GUGCa-CUUGCUGUa-C-GACCCGg -5'
29387 5' -55.6 NC_006151.1 + 136999 0.76 0.42022
Target:  5'- gGGCGCGCGcGcACGGC--GCUGGGCg -3'
miRNA:   3'- -CCGCGUGCaCuUGCUGuaCGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 136383 0.7 0.743653
Target:  5'- cGGCGCucuCGcgcuucugcugccUGAGCGGCuacGCgcgGGGCCc -3'
miRNA:   3'- -CCGCGu--GC-------------ACUUGCUGua-CGa--CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 135119 0.73 0.593168
Target:  5'- aGCGCGCG-GGGCGg---GCUGGGCg -3'
miRNA:   3'- cCGCGUGCaCUUGCuguaCGACCCGg -5'
29387 5' -55.6 NC_006151.1 + 135011 0.72 0.623796
Target:  5'- gGGgGCGCG-GGGgGGCAgcaGCgGGGCCg -3'
miRNA:   3'- -CCgCGUGCaCUUgCUGUa--CGaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 134761 0.7 0.754269
Target:  5'- cGCGCGCGgGGcccGCGGCuucgGCUccacGGGCCu -3'
miRNA:   3'- cCGCGUGCaCU---UGCUGua--CGA----CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 134618 0.67 0.892834
Target:  5'- gGGCcaGCGCGUGGcccagcuggugcugACGcGCGagccGCUGGGCUg -3'
miRNA:   3'- -CCG--CGUGCACU--------------UGC-UGUa---CGACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 134464 0.7 0.725046
Target:  5'- cGGUGCACcgcacGGACGGCcgccaCUGGGCCu -3'
miRNA:   3'- -CCGCGUGca---CUUGCUGuac--GACCCGG- -5'
29387 5' -55.6 NC_006151.1 + 133813 0.71 0.695102
Target:  5'- gGGUGCACGUccGggUGGCGUaaccCaGGGCCa -3'
miRNA:   3'- -CCGCGUGCA--CuuGCUGUAc---GaCCCGG- -5'
29387 5' -55.6 NC_006151.1 + 133381 0.69 0.800701
Target:  5'- uGGCgGC-CG-GGGCGGCG-GCcgGGGCCg -3'
miRNA:   3'- -CCG-CGuGCaCUUGCUGUaCGa-CCCGG- -5'
29387 5' -55.6 NC_006151.1 + 132844 0.69 0.782524
Target:  5'- cGGC-CACcacGGGCGGCcgGCccgGGGCCg -3'
miRNA:   3'- -CCGcGUGca-CUUGCUGuaCGa--CCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.