miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 21431 0.68 0.839397
Target:  5'- cCUCGGGGGUCG-CGGCGUgGggugGCCc -3'
miRNA:   3'- -GAGCCUCCGGUaGCUGCGgUaga-UGG- -5'
29388 3' -55.6 NC_006151.1 + 22221 0.68 0.855318
Target:  5'- -gCGaGGGGaCCGUCGucaGCGUCAgCUGCCa -3'
miRNA:   3'- gaGC-CUCC-GGUAGC---UGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 22552 0.72 0.649963
Target:  5'- -gCGGAGGCCA-CGugGCgGUa-GCCg -3'
miRNA:   3'- gaGCCUCCGGUaGCugCGgUAgaUGG- -5'
29388 3' -55.6 NC_006151.1 + 23248 0.75 0.452571
Target:  5'- cCUCGGGGGCC-UCGGgGgCAUC-GCCg -3'
miRNA:   3'- -GAGCCUCCGGuAGCUgCgGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 28233 0.68 0.839397
Target:  5'- --aGGGGGCCGggcCGACGggcCCAUUgGCCg -3'
miRNA:   3'- gagCCUCCGGUa--GCUGC---GGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 35313 0.71 0.680459
Target:  5'- gUCGaGGGGCCAagaUGGCGCCcUCgggGCCg -3'
miRNA:   3'- gAGC-CUCCGGUa--GCUGCGGuAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 35458 0.69 0.796447
Target:  5'- cCUCGcGAaaucccauuGGCCggCGGcCGCCAUCUuggGCCg -3'
miRNA:   3'- -GAGC-CU---------CCGGuaGCU-GCGGUAGA---UGG- -5'
29388 3' -55.6 NC_006151.1 + 37523 0.67 0.86298
Target:  5'- aCUCGaggaagcagcacGAGGCCcUCGuGCGCCucAUCUACa -3'
miRNA:   3'- -GAGC------------CUCCGGuAGC-UGCGG--UAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 37889 0.7 0.730375
Target:  5'- --gGGAGGCgacCGUCGAgGCCcUCUGCg -3'
miRNA:   3'- gagCCUCCG---GUAGCUgCGGuAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 39579 0.67 0.884701
Target:  5'- -cCGG-GGCCGagcCGcuGCGCC-UCUGCCg -3'
miRNA:   3'- gaGCCuCCGGUa--GC--UGCGGuAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 39805 0.67 0.898078
Target:  5'- -cUGGGGGC--UCGGCGCCccgCUGCg -3'
miRNA:   3'- gaGCCUCCGguAGCUGCGGua-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 40075 0.73 0.598957
Target:  5'- -gCGGGGGCC-UCgGGCGCCGgg-GCCg -3'
miRNA:   3'- gaGCCUCCGGuAG-CUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 40208 0.77 0.366491
Target:  5'- --aGGAGGCCGagGACGCCGgcaacccCUACCu -3'
miRNA:   3'- gagCCUCCGGUagCUGCGGUa------GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 43379 0.8 0.266183
Target:  5'- gUCGGGGGCgGUgGugGCCGUCgcucgugGCCg -3'
miRNA:   3'- gAGCCUCCGgUAgCugCGGUAGa------UGG- -5'
29388 3' -55.6 NC_006151.1 + 44683 0.66 0.932617
Target:  5'- -aCGGcGGCCggCGGCugaccguaCCAUCUGCUg -3'
miRNA:   3'- gaGCCuCCGGuaGCUGc-------GGUAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 48391 0.69 0.814128
Target:  5'- -cCGGAGGUCAUCcuGugGgCGUCgggcACCg -3'
miRNA:   3'- gaGCCUCCGGUAG--CugCgGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 48767 0.67 0.877677
Target:  5'- -aCGGGGGCC---GACGCC-UCcGCCc -3'
miRNA:   3'- gaGCCUCCGGuagCUGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 50770 0.69 0.78738
Target:  5'- cCUCGacGAcGGCCGcccCGACGCCccagCUGCCg -3'
miRNA:   3'- -GAGC--CU-CCGGUa--GCUGCGGua--GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 52331 0.7 0.717555
Target:  5'- uCUCGcugagcgccgcaaaGAGGUCGUCGuCGUCGUCcGCCg -3'
miRNA:   3'- -GAGC--------------CUCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 53109 0.66 0.932617
Target:  5'- --gGGAGGCCGuacUCGAgCGCCuucaugagCUcGCCg -3'
miRNA:   3'- gagCCUCCGGU---AGCU-GCGGua------GA-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.