miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 2116 0.67 0.898078
Target:  5'- -gCGGGgccGGCCGUCGcCGCCG-CggacGCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGCuGCGGUaGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 2169 0.67 0.898078
Target:  5'- cCUCGccGGGGCCGgcccCGGCGCCcgagGCCc -3'
miRNA:   3'- -GAGC--CUCCGGUa---GCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 3398 0.7 0.730375
Target:  5'- cCUCGGAGGgCcgCGGCGUguggGUCUcGCCg -3'
miRNA:   3'- -GAGCCUCCgGuaGCUGCGg---UAGA-UGG- -5'
29388 3' -55.6 NC_006151.1 + 3859 0.7 0.740141
Target:  5'- --gGGAGGCCGgagggGGCGCCcgCcGCCg -3'
miRNA:   3'- gagCCUCCGGUag---CUGCGGuaGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 4283 0.66 0.916411
Target:  5'- -gCGGcAGGCCAg-GACGCaggCGUCcGCCa -3'
miRNA:   3'- gaGCC-UCCGGUagCUGCG---GUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 4877 0.66 0.927453
Target:  5'- -gCGGAcgcGGCCGUCGGCcggagggucggaGCCGg--GCCa -3'
miRNA:   3'- gaGCCU---CCGGUAGCUG------------CGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 5010 0.66 0.932617
Target:  5'- -gCGGGGGCCGggcgggcucCGGgGCCGgg-GCCg -3'
miRNA:   3'- gaGCCUCCGGUa--------GCUgCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 5789 0.68 0.847455
Target:  5'- -gCGGGGGaCCAUCucCGCgGggCUGCCg -3'
miRNA:   3'- gaGCCUCC-GGUAGcuGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 6223 0.7 0.730375
Target:  5'- -cCGGAGGagCcgCGGCGCCGggagcccuggCUGCCg -3'
miRNA:   3'- gaGCCUCCg-GuaGCUGCGGUa---------GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 6261 0.71 0.670322
Target:  5'- gUCGG-GGCCGgacgCGAUGCCcUCUuCCu -3'
miRNA:   3'- gAGCCuCCGGUa---GCUGCGGuAGAuGG- -5'
29388 3' -55.6 NC_006151.1 + 13192 0.73 0.588799
Target:  5'- uCUCGG-GGCCcgCGGCGCC----GCCa -3'
miRNA:   3'- -GAGCCuCCGGuaGCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 14388 0.69 0.796447
Target:  5'- cCUCGGGGGUCG-CG-CGuCCGUC-GCCu -3'
miRNA:   3'- -GAGCCUCCGGUaGCuGC-GGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 15053 0.69 0.814128
Target:  5'- -gCGcGGGGCCc-CGGCGCCuUCUGCg -3'
miRNA:   3'- gaGC-CUCCGGuaGCUGCGGuAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 18073 0.73 0.598957
Target:  5'- cCUUGGGGGCCAgcagGACGUCGgcgGCCg -3'
miRNA:   3'- -GAGCCUCCGGUag--CUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 19293 0.66 0.910535
Target:  5'- -cCGG-GGCCAgCGGCGCgGgcgGCCg -3'
miRNA:   3'- gaGCCuCCGGUaGCUGCGgUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 19607 0.67 0.897431
Target:  5'- --aGGAacguccagaucccGGCCAccaCGGCGCCGUC-GCCg -3'
miRNA:   3'- gagCCU-------------CCGGUa--GCUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 19760 0.7 0.749813
Target:  5'- --aGGucGCCGUCGAgGUCAUCgucGCCg -3'
miRNA:   3'- gagCCucCGGUAGCUgCGGUAGa--UGG- -5'
29388 3' -55.6 NC_006151.1 + 19867 0.68 0.821874
Target:  5'- gCUCGG-GGCC-UCGguggagaGCGCCAgg-GCCa -3'
miRNA:   3'- -GAGCCuCCGGuAGC-------UGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 20400 0.67 0.870435
Target:  5'- -cCGG-GGUCAUCGcCGUCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 20489 0.71 0.700607
Target:  5'- -gCGGGGGUCGUCGGCGgC-UCUGgCu -3'
miRNA:   3'- gaGCCUCCGGUAGCUGCgGuAGAUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.