miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 125024 1.13 0.001871
Target:  5'- cCUCGGAGGCCAUCGACGCCAUCUACCg -3'
miRNA:   3'- -GAGCCUCCGGUAGCUGCGGUAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 43379 0.8 0.266183
Target:  5'- gUCGGGGGCgGUgGugGCCGUCgcucgugGCCg -3'
miRNA:   3'- gAGCCUCCGgUAgCugCGGUAGa------UGG- -5'
29388 3' -55.6 NC_006151.1 + 70994 0.78 0.313309
Target:  5'- aCUCGGccguGGCCAUCGuggGCGCCAUgcGCCg -3'
miRNA:   3'- -GAGCCu---CCGGUAGC---UGCGGUAgaUGG- -5'
29388 3' -55.6 NC_006151.1 + 40208 0.77 0.366491
Target:  5'- --aGGAGGCCGagGACGCCGgcaacccCUACCu -3'
miRNA:   3'- gagCCUCCGGUagCUGCGGUa------GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 105369 0.77 0.374579
Target:  5'- -aUGGAGGUgcuggcgcugcgCAgCGACGCCGUCUACCc -3'
miRNA:   3'- gaGCCUCCG------------GUaGCUGCGGUAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 91921 0.76 0.399556
Target:  5'- gCUCGGAGGCCAUCuccACGCC----GCCg -3'
miRNA:   3'- -GAGCCUCCGGUAGc--UGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 59565 0.76 0.408115
Target:  5'- gUCGGGGGCCAgCGcCGCCAgCUccaGCCg -3'
miRNA:   3'- gAGCCUCCGGUaGCuGCGGUaGA---UGG- -5'
29388 3' -55.6 NC_006151.1 + 97550 0.76 0.425572
Target:  5'- -gCGGAGGCCGUCGuCGCC----GCCg -3'
miRNA:   3'- gaGCCUCCGGUAGCuGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 23248 0.75 0.452571
Target:  5'- cCUCGGGGGCC-UCGGgGgCAUC-GCCg -3'
miRNA:   3'- -GAGCCUCCGGuAGCUgCgGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 130900 0.75 0.452571
Target:  5'- -gCGGcGGCCGUCGcCGUCGUCggugGCCg -3'
miRNA:   3'- gaGCCuCCGGUAGCuGCGGUAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 131129 0.74 0.499539
Target:  5'- --gGGAGGCCG-CGGCGCCGcg-GCCg -3'
miRNA:   3'- gagCCUCCGGUaGCUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 67596 0.74 0.518929
Target:  5'- gCUCGGAGGCgaCGUCGACG--AUCUugCg -3'
miRNA:   3'- -GAGCCUCCG--GUAGCUGCggUAGAugG- -5'
29388 3' -55.6 NC_006151.1 + 70797 0.74 0.528736
Target:  5'- -cCGGcguGGCCGUCGugGgCAgCUACCg -3'
miRNA:   3'- gaGCCu--CCGGUAGCugCgGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 60300 0.74 0.53861
Target:  5'- -aCGGAGGCCAUguccgggcCGuGCGCCAUCgGCUu -3'
miRNA:   3'- gaGCCUCCGGUA--------GC-UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 112598 0.73 0.548547
Target:  5'- -gUGGAGGCCGccgCGGCGCCG-CUGgCg -3'
miRNA:   3'- gaGCCUCCGGUa--GCUGCGGUaGAUgG- -5'
29388 3' -55.6 NC_006151.1 + 135735 0.73 0.548547
Target:  5'- cCUCGGGGGCgGUCuACGUCGUCUcguACg -3'
miRNA:   3'- -GAGCCUCCGgUAGcUGCGGUAGA---UGg -5'
29388 3' -55.6 NC_006151.1 + 124029 0.73 0.55854
Target:  5'- cCUCGGAGGCCccCGACGgCGagUACg -3'
miRNA:   3'- -GAGCCUCCGGuaGCUGCgGUagAUGg -5'
29388 3' -55.6 NC_006151.1 + 13192 0.73 0.588799
Target:  5'- uCUCGG-GGCCcgCGGCGCC----GCCa -3'
miRNA:   3'- -GAGCCuCCGGuaGCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 18073 0.73 0.598957
Target:  5'- cCUUGGGGGCCAgcagGACGUCGgcgGCCg -3'
miRNA:   3'- -GAGCCUCCGGUag--CUGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 40075 0.73 0.598957
Target:  5'- -gCGGGGGCC-UCgGGCGCCGgg-GCCg -3'
miRNA:   3'- gaGCCUCCGGuAG-CUGCGGUagaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.