miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 129537 0.66 0.904423
Target:  5'- --gGGGGGCCcggGGcCGCCGUCaACCg -3'
miRNA:   3'- gagCCUCCGGuagCU-GCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 132627 0.66 0.904423
Target:  5'- gCUCGcGuccGCCGUCGGCGCCcgg-ACCu -3'
miRNA:   3'- -GAGC-Cuc-CGGUAGCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 106607 0.66 0.904423
Target:  5'- -cCGGAGGCgaacgccgCGUaCGACGCCgcgGUC-ACCg -3'
miRNA:   3'- gaGCCUCCG--------GUA-GCUGCGG---UAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 130122 0.66 0.902544
Target:  5'- -cCGGGuucuGGCCGUgGGCGCgCGccagcagguacaccUCUGCCa -3'
miRNA:   3'- gaGCCU----CCGGUAgCUGCG-GU--------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 2116 0.67 0.898078
Target:  5'- -gCGGGgccGGCCGUCGcCGCCG-CggacGCCg -3'
miRNA:   3'- gaGCCU---CCGGUAGCuGCGGUaGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 2169 0.67 0.898078
Target:  5'- cCUCGccGGGGCCGgcccCGGCGCCcgagGCCc -3'
miRNA:   3'- -GAGC--CUCCGGUa---GCUGCGGuagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 39805 0.67 0.898078
Target:  5'- -cUGGGGGC--UCGGCGCCccgCUGCg -3'
miRNA:   3'- gaGCCUCCGguAGCUGCGGua-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 19607 0.67 0.897431
Target:  5'- --aGGAacguccagaucccGGCCAccaCGGCGCCGUC-GCCg -3'
miRNA:   3'- gagCCU-------------CCGGUa--GCUGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 54739 0.67 0.891503
Target:  5'- gCUCGccGAGGCCAUgCG-CGgCGUC-ACCa -3'
miRNA:   3'- -GAGC--CUCCGGUA-GCuGCgGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 125111 0.67 0.891503
Target:  5'- -gCGGGGGCUucGUgGugGCCuUCcGCCc -3'
miRNA:   3'- gaGCCUCCGG--UAgCugCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 64544 0.67 0.891503
Target:  5'- gUCGGGGGCgG-CGAgGCCGUggcgcGCCa -3'
miRNA:   3'- gAGCCUCCGgUaGCUgCGGUAga---UGG- -5'
29388 3' -55.6 NC_006151.1 + 78411 0.67 0.891503
Target:  5'- uCUCGGgccgcgAGcGCCGUgGcccACGCCGUCaACCg -3'
miRNA:   3'- -GAGCC------UC-CGGUAgC---UGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101170 0.67 0.891503
Target:  5'- -gUGGAGGCCGcccugacggcCGACGCCGUggACg -3'
miRNA:   3'- gaGCCUCCGGUa---------GCUGCGGUAgaUGg -5'
29388 3' -55.6 NC_006151.1 + 109184 0.67 0.891503
Target:  5'- -cUGGAGGgagUCGUCG-UGCC-UCUGCCg -3'
miRNA:   3'- gaGCCUCC---GGUAGCuGCGGuAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 101786 0.67 0.884701
Target:  5'- -cCGG-GGCCAUCccguccuCGCCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGcu-----GCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 39579 0.67 0.884701
Target:  5'- -cCGG-GGCCGagcCGcuGCGCC-UCUGCCg -3'
miRNA:   3'- gaGCCuCCGGUa--GC--UGCGGuAGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 48767 0.67 0.877677
Target:  5'- -aCGGGGGCC---GACGCC-UCcGCCc -3'
miRNA:   3'- gaGCCUCCGGuagCUGCGGuAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 75651 0.67 0.870435
Target:  5'- gUCGGGGGCCGgcUCGcCGCCGa----- -3'
miRNA:   3'- gAGCCUCCGGU--AGCuGCGGUagaugg -5'
29388 3' -55.6 NC_006151.1 + 20400 0.67 0.870435
Target:  5'- -cCGG-GGUCAUCGcCGUCGUC-GCCc -3'
miRNA:   3'- gaGCCuCCGGUAGCuGCGGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 132068 0.67 0.86298
Target:  5'- -aCGGcGGCUccucgaccagGUCGGCGCCGUCcuCCu -3'
miRNA:   3'- gaGCCuCCGG----------UAGCUGCGGUAGauGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.