miRNA display CGI


Results 41 - 60 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 3' -55.6 NC_006151.1 + 132068 0.67 0.86298
Target:  5'- -aCGGcGGCUccucgaccagGUCGGCGCCGUCcuCCu -3'
miRNA:   3'- gaGCCuCCGG----------UAGCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 103783 0.67 0.86298
Target:  5'- gUCGGAGcGCUggCGGCGCUgcaggccgcgcuGUCggcgGCCg -3'
miRNA:   3'- gAGCCUC-CGGuaGCUGCGG------------UAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 70710 0.67 0.86298
Target:  5'- cCUCGGuGGCCAac--CGCCGcCUGCUg -3'
miRNA:   3'- -GAGCCuCCGGUagcuGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 94246 0.67 0.86298
Target:  5'- gCUCGGGcucgcugagcgcGGCCAcguccUUGGCGUCGUCgcCCa -3'
miRNA:   3'- -GAGCCU------------CCGGU-----AGCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 61202 0.68 0.855318
Target:  5'- -gCGGAGaGCCAUUucagcaGCGCCGUCgucuUGCCc -3'
miRNA:   3'- gaGCCUC-CGGUAGc-----UGCGGUAG----AUGG- -5'
29388 3' -55.6 NC_006151.1 + 22221 0.68 0.855318
Target:  5'- -gCGaGGGGaCCGUCGucaGCGUCAgCUGCCa -3'
miRNA:   3'- gaGC-CUCC-GGUAGC---UGCGGUaGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 75421 0.68 0.855318
Target:  5'- --gGGAGGCCcggcGUgGGCGCgAagCUGCCg -3'
miRNA:   3'- gagCCUCCGG----UAgCUGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 78104 0.68 0.855318
Target:  5'- cCUCGu-GGCCGgggCgGACGCCAUcCUGCg -3'
miRNA:   3'- -GAGCcuCCGGUa--G-CUGCGGUA-GAUGg -5'
29388 3' -55.6 NC_006151.1 + 5789 0.68 0.847455
Target:  5'- -gCGGGGGaCCAUCucCGCgGggCUGCCg -3'
miRNA:   3'- gaGCCUCC-GGUAGcuGCGgUa-GAUGG- -5'
29388 3' -55.6 NC_006151.1 + 61766 0.68 0.846657
Target:  5'- -gCGGGGGCCGUggugcugCGGCGCgAg--GCCg -3'
miRNA:   3'- gaGCCUCCGGUA-------GCUGCGgUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 21431 0.68 0.839397
Target:  5'- cCUCGGGGGUCG-CGGCGUgGggugGCCc -3'
miRNA:   3'- -GAGCCUCCGGUaGCUGCGgUaga-UGG- -5'
29388 3' -55.6 NC_006151.1 + 86539 0.68 0.839397
Target:  5'- cCUCGcccGAGGCCGccgUGGCGCCGUU--CCg -3'
miRNA:   3'- -GAGC---CUCCGGUa--GCUGCGGUAGauGG- -5'
29388 3' -55.6 NC_006151.1 + 28233 0.68 0.839397
Target:  5'- --aGGGGGCCGggcCGACGggcCCAUUgGCCg -3'
miRNA:   3'- gagCCUCCGGUa--GCUGC---GGUAGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 101443 0.68 0.839397
Target:  5'- -cUGGucGUgGUCGGCGCCGugggccugggccUCUACCg -3'
miRNA:   3'- gaGCCucCGgUAGCUGCGGU------------AGAUGG- -5'
29388 3' -55.6 NC_006151.1 + 122884 0.68 0.831151
Target:  5'- -cCGGAccgGGCCAaccgCGACGCCcUCgagcGCCu -3'
miRNA:   3'- gaGCCU---CCGGUa---GCUGCGGuAGa---UGG- -5'
29388 3' -55.6 NC_006151.1 + 87578 0.68 0.831151
Target:  5'- -gCGGAcgucuccgccGGCacCAUCGACGCCAgcUCgGCCg -3'
miRNA:   3'- gaGCCU----------CCG--GUAGCUGCGGU--AGaUGG- -5'
29388 3' -55.6 NC_006151.1 + 78160 0.68 0.831151
Target:  5'- cCUCGGccGCCgugGUCGAgGCCGUgUccGCCg -3'
miRNA:   3'- -GAGCCucCGG---UAGCUgCGGUAgA--UGG- -5'
29388 3' -55.6 NC_006151.1 + 129088 0.68 0.831151
Target:  5'- aCUCGGGGGCguaGUUGcugcgcacgaGCGCCAgg-GCCg -3'
miRNA:   3'- -GAGCCUCCGg--UAGC----------UGCGGUagaUGG- -5'
29388 3' -55.6 NC_006151.1 + 128010 0.68 0.822726
Target:  5'- gUCGcGGGGCgGcggCGACGgCGUCUGCg -3'
miRNA:   3'- gAGC-CUCCGgUa--GCUGCgGUAGAUGg -5'
29388 3' -55.6 NC_006151.1 + 120329 0.68 0.822726
Target:  5'- uCUCGGAcGCCG-CGcGCGCCcgCgugGCCg -3'
miRNA:   3'- -GAGCCUcCGGUaGC-UGCGGuaGa--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.