miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 125059 1.11 0.001136
Target:  5'- uACAACAGCACGCACGUGCUGGCCGGCg -3'
miRNA:   3'- -UGUUGUCGUGCGUGCACGACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 104569 0.85 0.078416
Target:  5'- gGCGcGCGGCGCGCggACGUGCUgcaGGCCGGCg -3'
miRNA:   3'- -UGU-UGUCGUGCG--UGCACGA---CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 64309 0.83 0.09694
Target:  5'- uGCcGCAGCGCGC-CGUGCUGGCCucgcaccacgucGGCg -3'
miRNA:   3'- -UGuUGUCGUGCGuGCACGACCGG------------CCG- -5'
29388 5' -57.9 NC_006151.1 + 44661 0.81 0.132614
Target:  5'- cGCGGCAGCccgacacauGCGCACG-GC-GGCCGGCg -3'
miRNA:   3'- -UGUUGUCG---------UGCGUGCaCGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 102332 0.8 0.154691
Target:  5'- gACGGaGGCGCGCGCGcUGCuggacgUGGCCGGCg -3'
miRNA:   3'- -UGUUgUCGUGCGUGC-ACG------ACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 126150 0.79 0.189285
Target:  5'- ----gGGC-UGCugGUGCUGGCCGGCc -3'
miRNA:   3'- uguugUCGuGCGugCACGACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 117286 0.79 0.189285
Target:  5'- cCGACAGCGCGCGCGcgaGCUGcUCGGCg -3'
miRNA:   3'- uGUUGUCGUGCGUGCa--CGACcGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 132155 0.79 0.194059
Target:  5'- -uGACGGCGCGCAgcUGCgcGGCCGGCa -3'
miRNA:   3'- ugUUGUCGUGCGUgcACGa-CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 93613 0.78 0.207478
Target:  5'- uGCAGCAGCcgguccgcgcuguaGCGCACGUacgaGaugaUGGCCGGCa -3'
miRNA:   3'- -UGUUGUCG--------------UGCGUGCA----Cg---ACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 99287 0.78 0.224413
Target:  5'- uGCGACcuccucgAGCGCGC-CGUGCUGGaCCGcGCg -3'
miRNA:   3'- -UGUUG-------UCGUGCGuGCACGACC-GGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 125635 0.78 0.22496
Target:  5'- cACAACGGCACGgGCGUGaucgagGGCCaGCu -3'
miRNA:   3'- -UGUUGUCGUGCgUGCACga----CCGGcCG- -5'
29388 5' -57.9 NC_006151.1 + 73766 0.77 0.236154
Target:  5'- -gGGCAcGCAgGgCACGUGCUGGgCGGCg -3'
miRNA:   3'- ugUUGU-CGUgC-GUGCACGACCgGCCG- -5'
29388 5' -57.9 NC_006151.1 + 119459 0.77 0.259939
Target:  5'- gGCGACGuGgACGC-CGUGCgcuacgUGGCCGGCa -3'
miRNA:   3'- -UGUUGU-CgUGCGuGCACG------ACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 71777 0.77 0.259939
Target:  5'- gGCAGCGGCGgcgggggcugcCGCACcaGCUGGCCGaGCu -3'
miRNA:   3'- -UGUUGUCGU-----------GCGUGcaCGACCGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 119095 0.76 0.266183
Target:  5'- cGCGGCgcucGGCGCGUACGUGagccgcgcGGCCGGCc -3'
miRNA:   3'- -UGUUG----UCGUGCGUGCACga------CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 90757 0.76 0.266183
Target:  5'- -gGGCGGCGgGCACGgugGCggGGUCGGCg -3'
miRNA:   3'- ugUUGUCGUgCGUGCa--CGa-CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 31764 0.76 0.292374
Target:  5'- uGCGGCGGCGgGCGCGcGCcGGgCGGCu -3'
miRNA:   3'- -UGUUGUCGUgCGUGCaCGaCCgGCCG- -5'
29388 5' -57.9 NC_006151.1 + 18161 0.75 0.299228
Target:  5'- gGCGGCGGCGgGCAUGUcggaaugcggGCgGGCCGGUu -3'
miRNA:   3'- -UGUUGUCGUgCGUGCA----------CGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 127248 0.75 0.299228
Target:  5'- aGCucuuGCGGCGCGaCGCGcGgUGGCCGGUg -3'
miRNA:   3'- -UGu---UGUCGUGC-GUGCaCgACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 85139 0.75 0.313309
Target:  5'- uGCAccuGguGCAC-CGCGUGCggcagggGGCCGGCg -3'
miRNA:   3'- -UGU---UguCGUGcGUGCACGa------CCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.