miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 2233 0.68 0.710599
Target:  5'- gGCGGCGGCGCGgAC--GCUGGUCucgaagggGGCa -3'
miRNA:   3'- -UGUUGUCGUGCgUGcaCGACCGG--------CCG- -5'
29388 5' -57.9 NC_006151.1 + 2302 0.67 0.768839
Target:  5'- gGCGACGGCGCccggggucaGCACcaGCgGGgCGGCc -3'
miRNA:   3'- -UGUUGUCGUG---------CGUGcaCGaCCgGCCG- -5'
29388 5' -57.9 NC_006151.1 + 2352 0.71 0.53762
Target:  5'- cCAGCAGCGCcgcggcgcagaagGCGCGcaaCUcGGCCGGCa -3'
miRNA:   3'- uGUUGUCGUG-------------CGUGCac-GA-CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 2453 0.73 0.416788
Target:  5'- cGCAGCGGgGCGCcgagcccccaGCG-GUUGGCCGcGCg -3'
miRNA:   3'- -UGUUGUCgUGCG----------UGCaCGACCGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 2684 0.66 0.814128
Target:  5'- cGCAGCGGCucgGCcccgGgGUGCaGGCgGGCg -3'
miRNA:   3'- -UGUUGUCGug-CG----UgCACGaCCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 3266 0.71 0.509195
Target:  5'- cGCcGCGGCGCGCggcgAUGUGCgccagggcGGCCGGg -3'
miRNA:   3'- -UGuUGUCGUGCG----UGCACGa-------CCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 4081 0.66 0.805365
Target:  5'- cCAGCGGCGC-CACgGUGCgGGCgacgagGGCg -3'
miRNA:   3'- uGUUGUCGUGcGUG-CACGaCCGg-----CCG- -5'
29388 5' -57.9 NC_006151.1 + 4499 0.65 0.828642
Target:  5'- gGCcACGGCGCucacCGCGUGCggcagGGCCcagagcggguccugGGCg -3'
miRNA:   3'- -UGuUGUCGUGc---GUGCACGa----CCGG--------------CCG- -5'
29388 5' -57.9 NC_006151.1 + 4994 0.68 0.690557
Target:  5'- -gAGCGGCGCuuccuGCGCGgggGCcgGGCgGGCu -3'
miRNA:   3'- ugUUGUCGUG-----CGUGCa--CGa-CCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 5117 0.68 0.710599
Target:  5'- gGCGGCccGGCGCGgGCGagugggGCgccgGGCCGGa -3'
miRNA:   3'- -UGUUG--UCGUGCgUGCa-----CGa---CCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 5570 0.67 0.730375
Target:  5'- aGCAGgGGCuCGCG-GUGCUGGUgaUGGUg -3'
miRNA:   3'- -UGUUgUCGuGCGUgCACGACCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 5710 0.67 0.778175
Target:  5'- cACcGCuGCugGC-UGUGCUGG-UGGCg -3'
miRNA:   3'- -UGuUGuCGugCGuGCACGACCgGCCG- -5'
29388 5' -57.9 NC_006151.1 + 9040 0.69 0.619338
Target:  5'- cCGcCGGgGCGCcccGCGUGCUccgggggcgccGGCCGGCc -3'
miRNA:   3'- uGUuGUCgUGCG---UGCACGA-----------CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 10290 0.66 0.805365
Target:  5'- -aGGCGGCGgGCACGUcccGCguccCCGGCg -3'
miRNA:   3'- ugUUGUCGUgCGUGCA---CGacc-GGCCG- -5'
29388 5' -57.9 NC_006151.1 + 10621 0.68 0.680459
Target:  5'- -----cGCGCGCccGCGUGCgcucGuGCCGGCg -3'
miRNA:   3'- uguuguCGUGCG--UGCACGa---C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 11696 0.67 0.778175
Target:  5'- gGCcGCGGgACgGCGCGUGC-GGCgCGGa -3'
miRNA:   3'- -UGuUGUCgUG-CGUGCACGaCCG-GCCg -5'
29388 5' -57.9 NC_006151.1 + 17454 0.69 0.629547
Target:  5'- aGC-GCAGCAC-CACGUGUUGcCgCGGCg -3'
miRNA:   3'- -UGuUGUCGUGcGUGCACGACcG-GCCG- -5'
29388 5' -57.9 NC_006151.1 + 17489 0.66 0.822726
Target:  5'- uCGGCGGCGCGC-CGcUGCUGcaCCaGCg -3'
miRNA:   3'- uGUUGUCGUGCGuGC-ACGACc-GGcCG- -5'
29388 5' -57.9 NC_006151.1 + 18161 0.75 0.299228
Target:  5'- gGCGGCGGCGgGCAUGUcggaaugcggGCgGGCCGGUu -3'
miRNA:   3'- -UGUUGUCGUgCGUGCA----------CGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 18492 0.7 0.578672
Target:  5'- uGCGugGGCAgGCugGUGUacaCCGGCg -3'
miRNA:   3'- -UGUugUCGUgCGugCACGaccGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.