miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 139824 0.7 0.598957
Target:  5'- cGCGAC-GCACGCGCG----GGUCGGCg -3'
miRNA:   3'- -UGUUGuCGUGCGUGCacgaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 139605 0.69 0.628526
Target:  5'- aGCGGCGGCccguccGgGCGCG-GCUGGgggccauCCGGCg -3'
miRNA:   3'- -UGUUGUCG------UgCGUGCaCGACC-------GGCCG- -5'
29388 5' -57.9 NC_006151.1 + 139300 0.67 0.730375
Target:  5'- gGCGucuGCGGCGCGUGCugcucgaccGUGCUcGCCGGg -3'
miRNA:   3'- -UGU---UGUCGUGCGUG---------CACGAcCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 138331 0.7 0.598957
Target:  5'- uGCGGgccCGGCACGCGCGcaGCccGCCGGCc -3'
miRNA:   3'- -UGUU---GUCGUGCGUGCa-CGacCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 138254 0.66 0.822726
Target:  5'- cGCGACcGCGCaGCGgGUGgUGGCCa-- -3'
miRNA:   3'- -UGUUGuCGUG-CGUgCACgACCGGccg -5'
29388 5' -57.9 NC_006151.1 + 137763 0.74 0.366491
Target:  5'- --cGCGGCcugGCGCGCGUGCUccagcaGGCCGuGCu -3'
miRNA:   3'- uguUGUCG---UGCGUGCACGA------CCGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 137710 0.67 0.737221
Target:  5'- cGCGuguGCACGCccugccgucgccguACGcGgUGGCCGGCg -3'
miRNA:   3'- -UGUuguCGUGCG--------------UGCaCgACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 137130 0.73 0.416788
Target:  5'- cGCGACGGCGCgGCGCGacgcgGCgccggagaUGGCCGcGCa -3'
miRNA:   3'- -UGUUGUCGUG-CGUGCa----CG--------ACCGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 137081 0.72 0.461776
Target:  5'- cGCAcCGGCGCcaggccuucGCG-GUGCUGGCCGGg -3'
miRNA:   3'- -UGUuGUCGUG---------CGUgCACGACCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 136993 0.69 0.619338
Target:  5'- gGCGGCGggcgcGCGCGCACGgcGCUGGgcgcccugcUCGGCc -3'
miRNA:   3'- -UGUUGU-----CGUGCGUGCa-CGACC---------GGCCG- -5'
29388 5' -57.9 NC_006151.1 + 136946 0.7 0.603027
Target:  5'- cCGACGGCGCcguccugcgccgccuGCugGaGCUGGCCGccGCg -3'
miRNA:   3'- uGUUGUCGUG---------------CGugCaCGACCGGC--CG- -5'
29388 5' -57.9 NC_006151.1 + 136217 0.72 0.443466
Target:  5'- cGCuuCGGCcccgaggagaagACGCugGUGCUGGCCacGCg -3'
miRNA:   3'- -UGuuGUCG------------UGCGugCACGACCGGc-CG- -5'
29388 5' -57.9 NC_006151.1 + 135464 0.68 0.680459
Target:  5'- gUAGguGCGCGCcaGCGUGUccgcgcgGGCCaGGCg -3'
miRNA:   3'- uGUUguCGUGCG--UGCACGa------CCGG-CCG- -5'
29388 5' -57.9 NC_006151.1 + 135110 0.74 0.366491
Target:  5'- gGCGGCGGUAgCGCGCGgggcggGCUGGgCGGg -3'
miRNA:   3'- -UGUUGUCGU-GCGUGCa-----CGACCgGCCg -5'
29388 5' -57.9 NC_006151.1 + 134755 0.73 0.434466
Target:  5'- -gAGCAGCGCGCGCGggGCccgcGGCuuCGGCu -3'
miRNA:   3'- ugUUGUCGUGCGUGCa-CGa---CCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 133675 0.67 0.75843
Target:  5'- cGCGGCGGCGCGCccccgagGCG-GuCUcGUCGGCg -3'
miRNA:   3'- -UGUUGUCGUGCG-------UGCaC-GAcCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 133316 0.68 0.710599
Target:  5'- gGCGGCccgugucgaGGCGCGC-CGgGC-GGCCGGUu -3'
miRNA:   3'- -UGUUG---------UCGUGCGuGCaCGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 133157 0.73 0.408115
Target:  5'- gGCGGCGGCGCGgGCGUG--GGCCucGGCc -3'
miRNA:   3'- -UGUUGUCGUGCgUGCACgaCCGG--CCG- -5'
29388 5' -57.9 NC_006151.1 + 132841 0.68 0.690557
Target:  5'- -gGACGGcCAC-CACGgGC-GGCCGGCc -3'
miRNA:   3'- ugUUGUC-GUGcGUGCaCGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 132807 0.72 0.443466
Target:  5'- cGCugguACAGCGCGUcCGgGCUGGCCGcccGCg -3'
miRNA:   3'- -UGu---UGUCGUGCGuGCaCGACCGGC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.