miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 18517 0.66 0.814128
Target:  5'- nCGAgAGCAUGCGCGUccccGCccGcGUCGGCa -3'
miRNA:   3'- uGUUgUCGUGCGUGCA----CGa-C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 18690 0.66 0.805365
Target:  5'- --cACGG-GCGCGCGgGCgGcGCCGGCg -3'
miRNA:   3'- uguUGUCgUGCGUGCaCGaC-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 19008 0.67 0.778175
Target:  5'- cCAcCAGC-CGCGCGcGC--GCCGGCg -3'
miRNA:   3'- uGUuGUCGuGCGUGCaCGacCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 20557 0.72 0.453487
Target:  5'- cACGACGcGCAgGCuguCGUGCcacgauccgacgacgGGCCGGCa -3'
miRNA:   3'- -UGUUGU-CGUgCGu--GCACGa--------------CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 20699 0.7 0.576652
Target:  5'- --cGCAGCACGUACGaccccgcguccgGCggGGCCGGg -3'
miRNA:   3'- uguUGUCGUGCGUGCa-----------CGa-CCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 20900 0.7 0.598957
Target:  5'- cGCAGCAGCuccACGCGCccGCUGuaguuGCuCGGCg -3'
miRNA:   3'- -UGUUGUCG---UGCGUGcaCGAC-----CG-GCCG- -5'
29388 5' -57.9 NC_006151.1 + 20999 0.67 0.768839
Target:  5'- -gGACGGCGCuGCcggcgACGUGCacgcUGacGCCGGCg -3'
miRNA:   3'- ugUUGUCGUG-CG-----UGCACG----AC--CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 21369 0.67 0.740141
Target:  5'- gGCuGCGGCcaccCGCugG-GCacgacGGCCGGCg -3'
miRNA:   3'- -UGuUGUCGu---GCGugCaCGa----CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 21749 0.66 0.822726
Target:  5'- ---cCAGCACGCgccgaacuuguACGUGCgGuGCUGGUc -3'
miRNA:   3'- uguuGUCGUGCG-----------UGCACGaC-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 22078 0.68 0.710599
Target:  5'- cACGugGGCGCgGUACGUGggccGCCGGUg -3'
miRNA:   3'- -UGUugUCGUG-CGUGCACgac-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 22784 0.75 0.335361
Target:  5'- -gGGCcuCGCGCACGUGCUGGgccgucuccCCGGCc -3'
miRNA:   3'- ugUUGucGUGCGUGCACGACC---------GGCCG- -5'
29388 5' -57.9 NC_006151.1 + 23557 0.67 0.759382
Target:  5'- -aGACgAGCACG-ACGaUGUacaGGCCGGCg -3'
miRNA:   3'- ugUUG-UCGUGCgUGC-ACGa--CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 24216 0.69 0.660154
Target:  5'- aGCcACGcGCGCGUacuGCGUGUacGGCUGGCg -3'
miRNA:   3'- -UGuUGU-CGUGCG---UGCACGa-CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 24739 0.68 0.670322
Target:  5'- uGCGGCAGgACcagGCACGUcGCcgGGCCccgGGCg -3'
miRNA:   3'- -UGUUGUCgUG---CGUGCA-CGa-CCGG---CCG- -5'
29388 5' -57.9 NC_006151.1 + 26353 0.67 0.729394
Target:  5'- gGCGGCGGCgggccgcgucgggGCGCGCGUcccCcGGCgGGCg -3'
miRNA:   3'- -UGUUGUCG-------------UGCGUGCAc--GaCCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 27089 0.68 0.710599
Target:  5'- cGCGgcGCAGgGCGCGCGUGUcgcccgucacGUCGGCg -3'
miRNA:   3'- -UGU--UGUCgUGCGUGCACGac--------CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 29590 0.69 0.660154
Target:  5'- cGCGGCGGCuGCGgcCGCGgcgGCgggGGCUGGUg -3'
miRNA:   3'- -UGUUGUCG-UGC--GUGCa--CGa--CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 30616 0.68 0.710599
Target:  5'- gGCGGuCGGCguGCGCGCuGUGCgGGUgGGUg -3'
miRNA:   3'- -UGUU-GUCG--UGCGUG-CACGaCCGgCCG- -5'
29388 5' -57.9 NC_006151.1 + 31438 0.71 0.508226
Target:  5'- -gGGguGCGCGCGCGUGUguguauguguaugUGGCacCGGCa -3'
miRNA:   3'- ugUUguCGUGCGUGCACG-------------ACCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 31764 0.76 0.292374
Target:  5'- uGCGGCGGCGgGCGCGcGCcGGgCGGCu -3'
miRNA:   3'- -UGUUGUCGUgCGUGCaCGaCCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.