miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29388 5' -57.9 NC_006151.1 + 74330 0.66 0.805365
Target:  5'- uGCAGgGGCugGUucuCGUuccGCacgGGCCGGUu -3'
miRNA:   3'- -UGUUgUCGugCGu--GCA---CGa--CCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 10290 0.66 0.805365
Target:  5'- -aGGCGGCGgGCACGUcccGCguccCCGGCg -3'
miRNA:   3'- ugUUGUCGUgCGUGCA---CGacc-GGCCG- -5'
29388 5' -57.9 NC_006151.1 + 61266 0.66 0.805365
Target:  5'- cGCGGCGGCAgGCGguauCGUGCggGGaCGGa -3'
miRNA:   3'- -UGUUGUCGUgCGU----GCACGa-CCgGCCg -5'
29388 5' -57.9 NC_006151.1 + 69284 0.66 0.805365
Target:  5'- -uGGCGGCGCGCcaccagggacACGgGCc-GCCGGCg -3'
miRNA:   3'- ugUUGUCGUGCG----------UGCaCGacCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 57983 0.66 0.805365
Target:  5'- gGCGGCgAGCGCGcCGCGgaccGCcuccGGCgCGGCc -3'
miRNA:   3'- -UGUUG-UCGUGC-GUGCa---CGa---CCG-GCCG- -5'
29388 5' -57.9 NC_006151.1 + 73797 0.66 0.802706
Target:  5'- cGCAccuCGGCGCcCACGUcGCgcauggcgccgaggUGGUCGGCg -3'
miRNA:   3'- -UGUu--GUCGUGcGUGCA-CG--------------ACCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 129832 0.66 0.796447
Target:  5'- cGCGGCGGCguagcccaGCGaCACG-GcCUGGCCcaGGCc -3'
miRNA:   3'- -UGUUGUCG--------UGC-GUGCaC-GACCGG--CCG- -5'
29388 5' -57.9 NC_006151.1 + 52212 0.66 0.796447
Target:  5'- -gGAgAGCGC-CGCGUaGC-GGUCGGCg -3'
miRNA:   3'- ugUUgUCGUGcGUGCA-CGaCCGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 129225 0.66 0.796447
Target:  5'- aGCAgGCAGCugGCGCGggUGCgccccucGGUgacgCGGCg -3'
miRNA:   3'- -UGU-UGUCGugCGUGC--ACGa------CCG----GCCG- -5'
29388 5' -57.9 NC_006151.1 + 72648 0.66 0.796447
Target:  5'- cGCGGCucaGGCGCuCGCGUGCUGGaa-GCa -3'
miRNA:   3'- -UGUUG---UCGUGcGUGCACGACCggcCG- -5'
29388 5' -57.9 NC_006151.1 + 127691 0.66 0.795546
Target:  5'- uCGGCGGCGCucuccugcgacgaGCuCGUGgaGGCCccGGCg -3'
miRNA:   3'- uGUUGUCGUG-------------CGuGCACgaCCGG--CCG- -5'
29388 5' -57.9 NC_006151.1 + 73236 0.66 0.791024
Target:  5'- gGCAGCaucuggccgaagacgGGCACGgGCGccagGCgguuGCCGGCg -3'
miRNA:   3'- -UGUUG---------------UCGUGCgUGCa---CGac--CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 102689 0.66 0.78738
Target:  5'- cGCGGgGGCGCccgGCGCGgGC-GGCgCGGCc -3'
miRNA:   3'- -UGUUgUCGUG---CGUGCaCGaCCG-GCCG- -5'
29388 5' -57.9 NC_006151.1 + 129602 0.66 0.78738
Target:  5'- cGCG--AGCGgGCACGUGCgcaccagcgGGUCGaGCg -3'
miRNA:   3'- -UGUugUCGUgCGUGCACGa--------CCGGC-CG- -5'
29388 5' -57.9 NC_006151.1 + 68988 0.66 0.78738
Target:  5'- cCAGCAGCGCGCGCacGCaGGCguugCGGa -3'
miRNA:   3'- uGUUGUCGUGCGUGcaCGaCCG----GCCg -5'
29388 5' -57.9 NC_006151.1 + 36362 0.66 0.78738
Target:  5'- cCGGCAGCAcuCGCAgCG-GCagaGGCCGGg -3'
miRNA:   3'- uGUUGUCGU--GCGU-GCaCGa--CCGGCCg -5'
29388 5' -57.9 NC_006151.1 + 100661 0.66 0.78738
Target:  5'- uCGACgAGCGCG-GCGUGCUGGC--GCu -3'
miRNA:   3'- uGUUG-UCGUGCgUGCACGACCGgcCG- -5'
29388 5' -57.9 NC_006151.1 + 53842 0.66 0.786466
Target:  5'- -uGAgGGUcuggAUGCACGUGCUcuugccgGaGCCGGCa -3'
miRNA:   3'- ugUUgUCG----UGCGUGCACGA-------C-CGGCCG- -5'
29388 5' -57.9 NC_006151.1 + 123600 0.66 0.784633
Target:  5'- cCAGCGGCAgGCcuggcgauauauccGCGaGCUGGUgcUGGCg -3'
miRNA:   3'- uGUUGUCGUgCG--------------UGCaCGACCG--GCCG- -5'
29388 5' -57.9 NC_006151.1 + 69722 0.66 0.784633
Target:  5'- gGCAGCAGCGCGUcgauguggccccccGCGgccGCgaccGCCGGg -3'
miRNA:   3'- -UGUUGUCGUGCG--------------UGCa--CGac--CGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.