miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 66718 0.66 0.873178
Target:  5'- cGCUUCgucaaCCGCUUCGCGcuccugUCGCGGn- -3'
miRNA:   3'- cCGAGGaa---GGCGAAGUGC------AGCGCCcg -5'
29389 3' -57.4 NC_006151.1 + 66751 0.74 0.425947
Target:  5'- cGCUCCUUCCGCg--ACGcCGCGacGGCc -3'
miRNA:   3'- cCGAGGAAGGCGaagUGCaGCGC--CCG- -5'
29389 3' -57.4 NC_006151.1 + 67167 0.67 0.826611
Target:  5'- uGGUUCCUggucCCGCUcaUCGCccUCGCGcuGGCc -3'
miRNA:   3'- -CCGAGGAa---GGCGA--AGUGc-AGCGC--CCG- -5'
29389 3' -57.4 NC_006151.1 + 67697 0.66 0.876028
Target:  5'- aGCUCCcgcuugUCCGCcuggcgccacaggCACGgCGCGGcGCa -3'
miRNA:   3'- cCGAGGa-----AGGCGaa-----------GUGCaGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 67818 0.68 0.736221
Target:  5'- aGCagCUgCCGCcgUCGuCGUCGCGGGg -3'
miRNA:   3'- cCGagGAaGGCGa-AGU-GCAGCGCCCg -5'
29389 3' -57.4 NC_006151.1 + 69116 0.7 0.626999
Target:  5'- aGCUCCcgCCGCgccucCGCGggcagggcgCGCGGGUg -3'
miRNA:   3'- cCGAGGaaGGCGaa---GUGCa--------GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 69307 0.7 0.657188
Target:  5'- gGGCcgCCgg-CGCcaCACGUgCGCGGGCg -3'
miRNA:   3'- -CCGa-GGaagGCGaaGUGCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 69435 0.73 0.489441
Target:  5'- cGGCgccgCCgccgUUCGCguccucgCGCGcCGCGGGCg -3'
miRNA:   3'- -CCGa---GGa---AGGCGaa-----GUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 72065 0.66 0.873178
Target:  5'- cGGCgcgcgCCaccacCCGCgccgUCAgcUCGCGGGCc -3'
miRNA:   3'- -CCGa----GGaa---GGCGa---AGUgcAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 72331 0.68 0.754335
Target:  5'- cGGUcagCCauggCCGCgagCACGUCGCcgccgcaGGGCa -3'
miRNA:   3'- -CCGa--GGaa--GGCGaa-GUGCAGCG-------CCCG- -5'
29389 3' -57.4 NC_006151.1 + 73698 0.67 0.809647
Target:  5'- cGGCUCUgcgCCGCgugCugGgccaCGGGCu -3'
miRNA:   3'- -CCGAGGaa-GGCGaa-GugCagc-GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 78115 0.67 0.79206
Target:  5'- gGGCggacgCCaUCCuGCggCGgGcCGCGGGCg -3'
miRNA:   3'- -CCGa----GGaAGG-CGaaGUgCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 78196 0.7 0.647134
Target:  5'- cGGCggaccCCUUCUucgggacggGCUcCACGUCGCucacGGGCg -3'
miRNA:   3'- -CCGa----GGAAGG---------CGAaGUGCAGCG----CCCG- -5'
29389 3' -57.4 NC_006151.1 + 82156 0.71 0.606879
Target:  5'- cGGCUCCaggUCCGagccgaGCGcCGgGGGCg -3'
miRNA:   3'- -CCGAGGa--AGGCgaag--UGCaGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 82663 0.72 0.508393
Target:  5'- cGGC-CCaccCUGCggCGCGcCGCGGGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 83353 0.69 0.716815
Target:  5'- uGCUCC--CCGgcgCGCG-CGCGGGCg -3'
miRNA:   3'- cCGAGGaaGGCgaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 84965 0.66 0.88024
Target:  5'- cGCUCCaggccaCGCU---CGUCGCGGaGCg -3'
miRNA:   3'- cCGAGGaag---GCGAaguGCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 86698 0.7 0.626999
Target:  5'- uGCUgCUgcgcgaCCGCUgggagCugGUCGCGGcGCg -3'
miRNA:   3'- cCGAgGAa-----GGCGAa----GugCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 89721 0.69 0.697127
Target:  5'- cGGCgCCggCCGCggcCGCgGUgGUGGGCg -3'
miRNA:   3'- -CCGaGGaaGGCGaa-GUG-CAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 90955 0.67 0.826611
Target:  5'- gGGCUCCgUCgCGCcgacCGCGUCGaCGcccuGGCg -3'
miRNA:   3'- -CCGAGGaAG-GCGaa--GUGCAGC-GC----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.