miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 22299 0.74 0.452577
Target:  5'- cGGCgUCCacgUCCGCgccgaGCGUCGUccGGGCg -3'
miRNA:   3'- -CCG-AGGa--AGGCGaag--UGCAGCG--CCCG- -5'
29389 3' -57.4 NC_006151.1 + 22771 0.67 0.818211
Target:  5'- cGGCU-CUUCUGCUgggccUCGCGcacgUGCuGGGCc -3'
miRNA:   3'- -CCGAgGAAGGCGA-----AGUGCa---GCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 26355 0.66 0.865906
Target:  5'- cGGCggCgggCCGCgucggggcgCGCGUCccccgGCGGGCg -3'
miRNA:   3'- -CCGagGaa-GGCGaa-------GUGCAG-----CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 28856 0.66 0.87246
Target:  5'- cGGCUCCcccaUUgGCcggCGCGUCcccggagGCGGGUg -3'
miRNA:   3'- -CCGAGGa---AGgCGaa-GUGCAG-------CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 29595 0.66 0.85843
Target:  5'- cGGCUgCggCCGCg--GCGgCGgGGGCu -3'
miRNA:   3'- -CCGAgGaaGGCGaagUGCaGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 32549 0.68 0.755278
Target:  5'- -cCUCCUUUCGCUcC-CGUCuccCGGGCa -3'
miRNA:   3'- ccGAGGAAGGCGAaGuGCAGc--GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 33898 0.67 0.83484
Target:  5'- gGGCgggggCCU-CgCGCcucCGCGUCcgGCGGGCg -3'
miRNA:   3'- -CCGa----GGAaG-GCGaa-GUGCAG--CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 34456 0.72 0.508393
Target:  5'- cGGCUCCUUCC-UUcCGgGUC-CGGGCg -3'
miRNA:   3'- -CCGAGGAAGGcGAaGUgCAGcGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 35579 0.66 0.85843
Target:  5'- cGGC-CauuggUCCGCUUacCugGggGCGGGCu -3'
miRNA:   3'- -CCGaGga---AGGCGAA--GugCagCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 39883 0.66 0.873178
Target:  5'- gGGCcugCCggCCGaguugcgcgcCUUCuGCGcCGCGGGCu -3'
miRNA:   3'- -CCGa--GGaaGGC----------GAAG-UGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 48146 0.68 0.736221
Target:  5'- gGGUUCCUggcaCCG----GCGUCGCGGGa -3'
miRNA:   3'- -CCGAGGAa---GGCgaagUGCAGCGCCCg -5'
29389 3' -57.4 NC_006151.1 + 53977 0.7 0.657188
Target:  5'- cGGCgCC-UCCGCgg-GCGUCGCGGcgaGCu -3'
miRNA:   3'- -CCGaGGaAGGCGaagUGCAGCGCC---CG- -5'
29389 3' -57.4 NC_006151.1 + 57524 0.68 0.745798
Target:  5'- cGGCggCCgccUCCGg--CGCGgcCGCGGGCa -3'
miRNA:   3'- -CCGa-GGa--AGGCgaaGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 58712 0.66 0.856149
Target:  5'- cGGgUCCgccagcgcccccgugCCGC-UCGCGUCGCGcaGCg -3'
miRNA:   3'- -CCgAGGaa-------------GGCGaAGUGCAGCGCc-CG- -5'
29389 3' -57.4 NC_006151.1 + 59183 0.69 0.707002
Target:  5'- cGGCgaucucggCCUUgCGCagguucUUCACGcgCGUGGGCc -3'
miRNA:   3'- -CCGa-------GGAAgGCG------AAGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 61442 0.66 0.842891
Target:  5'- cGGCgcccgCCcgcgUCCGCcgcCAUGU-GCGGGCc -3'
miRNA:   3'- -CCGa----GGa---AGGCGaa-GUGCAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 61712 0.7 0.647134
Target:  5'- aGCUUCUUCgGCUUCACGgccacCGUGcugcuGGCg -3'
miRNA:   3'- cCGAGGAAGgCGAAGUGCa----GCGC-----CCG- -5'
29389 3' -57.4 NC_006151.1 + 62030 0.69 0.726557
Target:  5'- cGGCcagCCccCCGCUgcgcCGCGUgGCGGuGCa -3'
miRNA:   3'- -CCGa--GGaaGGCGAa---GUGCAgCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 64512 0.71 0.60487
Target:  5'- gGGCgcgcgCCgccaaaggccgCCGCggcCGCGUCGgGGGCg -3'
miRNA:   3'- -CCGa----GGaa---------GGCGaa-GUGCAGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 64616 0.66 0.88024
Target:  5'- cGGCgCCgcgCCGCcggcCGCGgggCGCGGcGCc -3'
miRNA:   3'- -CCGaGGaa-GGCGaa--GUGCa--GCGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.