miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 64512 0.71 0.60487
Target:  5'- gGGCgcgcgCCgccaaaggccgCCGCggcCGCGUCGgGGGCg -3'
miRNA:   3'- -CCGa----GGaa---------GGCGaa-GUGCAGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 82156 0.71 0.606879
Target:  5'- cGGCUCCaggUCCGagccgaGCGcCGgGGGCg -3'
miRNA:   3'- -CCGAGGa--AGGCgaag--UGCaGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 86698 0.7 0.626999
Target:  5'- uGCUgCUgcgcgaCCGCUgggagCugGUCGCGGcGCg -3'
miRNA:   3'- cCGAgGAa-----GGCGAa----GugCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 69116 0.7 0.626999
Target:  5'- aGCUCCcgCCGCgccucCGCGggcagggcgCGCGGGUg -3'
miRNA:   3'- cCGAGGaaGGCGaa---GUGCa--------GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 102394 0.7 0.626999
Target:  5'- uGGCgCUggUCGCggcgCGCGUCGCGcGGCc -3'
miRNA:   3'- -CCGaGGaaGGCGaa--GUGCAGCGC-CCG- -5'
29389 3' -57.4 NC_006151.1 + 555 0.7 0.637068
Target:  5'- cGGCcCCUUCCGCUUCccccggACGUgaCGCcGGUc -3'
miRNA:   3'- -CCGaGGAAGGCGAAG------UGCA--GCGcCCG- -5'
29389 3' -57.4 NC_006151.1 + 78196 0.7 0.647134
Target:  5'- cGGCggaccCCUUCUucgggacggGCUcCACGUCGCucacGGGCg -3'
miRNA:   3'- -CCGa----GGAAGG---------CGAaGUGCAGCG----CCCG- -5'
29389 3' -57.4 NC_006151.1 + 10183 0.7 0.647134
Target:  5'- -uCUCUgcgUUCGCcggUCGCGgCGCGGGCg -3'
miRNA:   3'- ccGAGGa--AGGCGa--AGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 61712 0.7 0.647134
Target:  5'- aGCUUCUUCgGCUUCACGgccacCGUGcugcuGGCg -3'
miRNA:   3'- cCGAGGAAGgCGAAGUGCa----GCGC-----CCG- -5'
29389 3' -57.4 NC_006151.1 + 53977 0.7 0.657188
Target:  5'- cGGCgCC-UCCGCgg-GCGUCGCGGcgaGCu -3'
miRNA:   3'- -CCGaGGaAGGCGaagUGCAGCGCC---CG- -5'
29389 3' -57.4 NC_006151.1 + 115190 0.7 0.657188
Target:  5'- cGCUCCagCCag--CGCGcCGCGGGCg -3'
miRNA:   3'- cCGAGGaaGGcgaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 69307 0.7 0.657188
Target:  5'- gGGCcgCCgg-CGCcaCACGUgCGCGGGCg -3'
miRNA:   3'- -CCGa-GGaagGCGaaGUGCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 139911 0.7 0.667222
Target:  5'- cGGCuUCCgcgCCGCgggCuCGUCGCcguGGGCc -3'
miRNA:   3'- -CCG-AGGaa-GGCGaa-GuGCAGCG---CCCG- -5'
29389 3' -57.4 NC_006151.1 + 139810 0.7 0.677229
Target:  5'- cGCgccgCCgucUCCGCgacgCACG-CGCGGGUc -3'
miRNA:   3'- cCGa---GGa--AGGCGaa--GUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 11853 0.69 0.6872
Target:  5'- -cCUCCUUCCuCUccccgucgacUCGCGUCGCGG-Cg -3'
miRNA:   3'- ccGAGGAAGGcGA----------AGUGCAGCGCCcG- -5'
29389 3' -57.4 NC_006151.1 + 130499 0.69 0.6872
Target:  5'- cGGCgCCacacgCCGCgcgUCuCGggCGCGGGCg -3'
miRNA:   3'- -CCGaGGaa---GGCGa--AGuGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 129268 0.69 0.696137
Target:  5'- aGGCaUCCUUCCacgaagcGCggCGCGUUccuCGGGCg -3'
miRNA:   3'- -CCG-AGGAAGG-------CGaaGUGCAGc--GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 89721 0.69 0.697127
Target:  5'- cGGCgCCggCCGCggcCGCgGUgGUGGGCg -3'
miRNA:   3'- -CCGaGGaaGGCGaa-GUG-CAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 59183 0.69 0.707002
Target:  5'- cGGCgaucucggCCUUgCGCagguucUUCACGcgCGUGGGCc -3'
miRNA:   3'- -CCGa-------GGAAgGCG------AAGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 10497 0.69 0.716815
Target:  5'- cGGCgcgcgCCcgCCGCcgcaggCGCGUCcccggcGCGGGCg -3'
miRNA:   3'- -CCGa----GGaaGGCGaa----GUGCAG------CGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.