miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 26355 0.66 0.865906
Target:  5'- cGGCggCgggCCGCgucggggcgCGCGUCccccgGCGGGCg -3'
miRNA:   3'- -CCGagGaa-GGCGaa-------GUGCAG-----CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 11011 0.66 0.85843
Target:  5'- cGGCUcgcCCgcCCGC-UCGC-UCGCcGGGCc -3'
miRNA:   3'- -CCGA---GGaaGGCGaAGUGcAGCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 29595 0.66 0.85843
Target:  5'- cGGCUgCggCCGCg--GCGgCGgGGGCu -3'
miRNA:   3'- -CCGAgGaaGGCGaagUGCaGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 35579 0.66 0.85843
Target:  5'- cGGC-CauuggUCCGCUUacCugGggGCGGGCu -3'
miRNA:   3'- -CCGaGga---AGGCGAA--GugCagCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 127722 0.66 0.85843
Target:  5'- aGGCcCCgg-CGUccC-CGUCGCGGGCg -3'
miRNA:   3'- -CCGaGGaagGCGaaGuGCAGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 119429 0.66 0.85843
Target:  5'- cGCUgCga-CGCgggCACGuUCGUGGGCc -3'
miRNA:   3'- cCGAgGaagGCGaa-GUGC-AGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 134561 0.66 0.85843
Target:  5'- cGGC-CCgugCCGCUUC-CGgauccagaacCGCGGcGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGAAGuGCa---------GCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 136811 0.66 0.85843
Target:  5'- cGCUCgCggCCGa--CGCGccgCGCGGGCu -3'
miRNA:   3'- cCGAG-GaaGGCgaaGUGCa--GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 58712 0.66 0.856149
Target:  5'- cGGgUCCgccagcgcccccgugCCGC-UCGCGUCGCGcaGCg -3'
miRNA:   3'- -CCgAGGaa-------------GGCGaAGUGCAGCGCc-CG- -5'
29389 3' -57.4 NC_006151.1 + 100270 0.66 0.850757
Target:  5'- ---aCCUgCCGCUUCGuCuucCGCGGGCg -3'
miRNA:   3'- ccgaGGAaGGCGAAGU-Gca-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 14651 0.66 0.849979
Target:  5'- gGGCUCgggUCCGgUUCcgggucgGCGUCGgGGaGCc -3'
miRNA:   3'- -CCGAGga-AGGCgAAG-------UGCAGCgCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 131213 0.66 0.842891
Target:  5'- -cCUCCUcuUCCGCgucccaCGCGUCGCcgucGGCc -3'
miRNA:   3'- ccGAGGA--AGGCGaa----GUGCAGCGc---CCG- -5'
29389 3' -57.4 NC_006151.1 + 61442 0.66 0.842891
Target:  5'- cGGCgcccgCCcgcgUCCGCcgcCAUGU-GCGGGCc -3'
miRNA:   3'- -CCGa----GGa---AGGCGaa-GUGCAgCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 3591 0.66 0.842891
Target:  5'- gGGCcCCcggUCCuCUUCGuCGUCGCGguGGCc -3'
miRNA:   3'- -CCGaGGa--AGGcGAAGU-GCAGCGC--CCG- -5'
29389 3' -57.4 NC_006151.1 + 99222 0.67 0.83484
Target:  5'- aGGCcagcgCCUcgCCGCUgCAgGUCGUGGagGCg -3'
miRNA:   3'- -CCGa----GGAa-GGCGAaGUgCAGCGCC--CG- -5'
29389 3' -57.4 NC_006151.1 + 5409 0.67 0.83484
Target:  5'- cGGCgaggCCgagUCCGUccucguccUUCuCGgggcCGCGGGCg -3'
miRNA:   3'- -CCGa---GGa--AGGCG--------AAGuGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 33898 0.67 0.83484
Target:  5'- gGGCgggggCCU-CgCGCcucCGCGUCcgGCGGGCg -3'
miRNA:   3'- -CCGa----GGAaG-GCGaa-GUGCAG--CGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 90955 0.67 0.826611
Target:  5'- gGGCUCCgUCgCGCcgacCGCGUCGaCGcccuGGCg -3'
miRNA:   3'- -CCGAGGaAG-GCGaa--GUGCAGC-GC----CCG- -5'
29389 3' -57.4 NC_006151.1 + 99653 0.67 0.826611
Target:  5'- uGGCUcgCCUUCCGCgcgCAgaGcCGCugGGGCc -3'
miRNA:   3'- -CCGA--GGAAGGCGaa-GUg-CaGCG--CCCG- -5'
29389 3' -57.4 NC_006151.1 + 67167 0.67 0.826611
Target:  5'- uGGUUCCUggucCCGCUcaUCGCccUCGCGcuGGCc -3'
miRNA:   3'- -CCGAGGAa---GGCGA--AGUGc-AGCGC--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.