miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29389 3' -57.4 NC_006151.1 + 22771 0.67 0.818211
Target:  5'- cGGCU-CUUCUGCUgggccUCGCGcacgUGCuGGGCc -3'
miRNA:   3'- -CCGAgGAAGGCGA-----AGUGCa---GCG-CCCG- -5'
29389 3' -57.4 NC_006151.1 + 127310 0.67 0.809647
Target:  5'- aGGCcgUCgUCCGCg-CGgGUcCGCGGGCg -3'
miRNA:   3'- -CCGa-GGaAGGCGaaGUgCA-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 73698 0.67 0.809647
Target:  5'- cGGCUCUgcgCCGCgugCugGgccaCGGGCu -3'
miRNA:   3'- -CCGAGGaa-GGCGaa-GugCagc-GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 97246 0.67 0.809647
Target:  5'- uGGCg-CggCCGCg-CAUGUCGgGGGCc -3'
miRNA:   3'- -CCGagGaaGGCGaaGUGCAGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 122375 0.67 0.800927
Target:  5'- gGGCUCga--CGaggCGCGcCGCGGGCg -3'
miRNA:   3'- -CCGAGgaagGCgaaGUGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 123365 0.67 0.800927
Target:  5'- cGCUCCUUCCgGCcgUCACGcgcaaguucuUCGagcucgucaaCGGGCc -3'
miRNA:   3'- cCGAGGAAGG-CGa-AGUGC----------AGC----------GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 131112 0.67 0.800927
Target:  5'- gGGC-CCggCCGCggCGCGggaggcCGCGGcGCc -3'
miRNA:   3'- -CCGaGGaaGGCGaaGUGCa-----GCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 4027 0.67 0.79206
Target:  5'- cGGCguaggUCCaggCgGCcUCGCGggCGCGGGCc -3'
miRNA:   3'- -CCG-----AGGaa-GgCGaAGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 78115 0.67 0.79206
Target:  5'- gGGCggacgCCaUCCuGCggCGgGcCGCGGGCg -3'
miRNA:   3'- -CCGa----GGaAGG-CGaaGUgCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 106644 0.68 0.783053
Target:  5'- aGCgCCUggacgCCGCggcgCACGUgCGCGaGGCc -3'
miRNA:   3'- cCGaGGAa----GGCGaa--GUGCA-GCGC-CCG- -5'
29389 3' -57.4 NC_006151.1 + 18665 0.68 0.764653
Target:  5'- gGGCgucgUCCggCCGUacgggUUcCACGggcgCGCGGGCg -3'
miRNA:   3'- -CCG----AGGaaGGCG-----AA-GUGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 32549 0.68 0.755278
Target:  5'- -cCUCCUUUCGCUcC-CGUCuccCGGGCa -3'
miRNA:   3'- ccGAGGAAGGCGAaGuGCAGc--GCCCG- -5'
29389 3' -57.4 NC_006151.1 + 126390 0.68 0.755278
Target:  5'- gGGC-CCgcgCUGCUggccagcCGCGUCG-GGGCg -3'
miRNA:   3'- -CCGaGGaa-GGCGAa------GUGCAGCgCCCG- -5'
29389 3' -57.4 NC_006151.1 + 4138 0.68 0.755278
Target:  5'- cGGCcgggCCggCCccggGgaUCGCGUCGCGGaGCg -3'
miRNA:   3'- -CCGa---GGaaGG----CgaAGUGCAGCGCC-CG- -5'
29389 3' -57.4 NC_006151.1 + 72331 0.68 0.754335
Target:  5'- cGGUcagCCauggCCGCgagCACGUCGCcgccgcaGGGCa -3'
miRNA:   3'- -CCGa--GGaa--GGCGaa-GUGCAGCG-------CCCG- -5'
29389 3' -57.4 NC_006151.1 + 136097 0.68 0.745798
Target:  5'- cGCUCCa-UCGCggUCggGCGcCGCGGGCu -3'
miRNA:   3'- cCGAGGaaGGCGa-AG--UGCaGCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 57524 0.68 0.745798
Target:  5'- cGGCggCCgccUCCGg--CGCGgcCGCGGGCa -3'
miRNA:   3'- -CCGa-GGa--AGGCgaaGUGCa-GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 3983 0.68 0.736221
Target:  5'- cGGCgagCCggCCGCggcCACGUUGgccgGGGCg -3'
miRNA:   3'- -CCGa--GGaaGGCGaa-GUGCAGCg---CCCG- -5'
29389 3' -57.4 NC_006151.1 + 118527 0.68 0.736221
Target:  5'- uGCaacgCCUUCCuGCacUACGggggCGCGGGCa -3'
miRNA:   3'- cCGa---GGAAGG-CGaaGUGCa---GCGCCCG- -5'
29389 3' -57.4 NC_006151.1 + 102470 0.68 0.736221
Target:  5'- gGGCUCCUacgcgcagcUCUcggcguGCUUCAUGgacgcCGCGGcGCg -3'
miRNA:   3'- -CCGAGGA---------AGG------CGAAGUGCa----GCGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.